Variant report

Variant	rs11046192
Chromosome Location	chr12:21949046-21949047
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11046196	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11046198	1.00[CEU][hapmap];0.80[CHB][hapmap];0.92[EUR][1000 genomes]
rs11046199	0.92[EUR][1000 genomes]
rs11046200	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs11046204	0.84[EUR][1000 genomes]
rs11046206	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11046207	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11046209	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11046211	1.00[CEU][hapmap]
rs12369421	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12370561	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12371172	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2307026	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs58291806	0.92[EUR][1000 genomes]
rs73070684	0.92[EUR][1000 genomes]
rs73070702	0.84[EUR][1000 genomes]
rs7309274	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043936	chr12:21562673-21979030	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv557741	chr12:21578559-22169854	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv469164	chr12:21688900-21966701	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv557744	chr12:21688900-21966701	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1051073	chr12:21910875-22271209	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv470275	chr12:21938544-22126314	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21941800-21957400	Weak transcription	Adipose Nuclei	Adipose
2	chr12:21947800-21949200	Weak transcription	Fetal Heart	heart
3	chr12:21948000-21952800	Weak transcription	Liver	Liver
4	chr12:21948000-21957800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr12:21948800-21950000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links