Variant report

Variant	rs11046206
Chromosome Location	chr12:21993532-21993533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11046192	0.84[EUR][1000 genomes]
rs11046196	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11046198	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11046199	0.92[EUR][1000 genomes]
rs11046200	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[EUR][1000 genomes]
rs11046204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11046205	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs11046207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11046209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11046211	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12367996	1.00[ASN][1000 genomes]
rs12369421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12370561	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12371172	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2307026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58291806	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73070684	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73070702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074912	0.87[EUR][1000 genomes]
rs73074914	0.87[EUR][1000 genomes]
rs829076	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557741	chr12:21578559-22169854	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1051073	chr12:21910875-22271209	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv470275	chr12:21938544-22126314	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21958400-22003000	Weak transcription	Psoas Muscle	Psoas
2	chr12:21973800-21994800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:21973800-22025400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:21980600-22002800	Weak transcription	Fetal Heart	heart
5	chr12:21983600-22002800	Strong transcription	Liver	Liver
6	chr12:21983800-22002000	Strong transcription	Skeletal Muscle Female	skeletal muscle
7	chr12:21983800-22003000	Weak transcription	Pancreas	Pancrea
8	chr12:21984800-21994200	Weak transcription	Fetal Kidney	kidney
9	chr12:21984800-21995000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr12:21985000-22003000	Weak transcription	Right Ventricle	heart
11	chr12:21985400-21995200	Weak transcription	Ovary	ovary
12	chr12:21985400-21996600	Weak transcription	NHDF-Ad	bronchial
13	chr12:21985400-22005000	Weak transcription	NHLF	lung
14	chr12:21985600-21994800	Weak transcription	Adipose Nuclei	Adipose
15	chr12:21985600-22002800	Weak transcription	Fetal Lung	lung
16	chr12:21985800-21994800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr12:21985800-22004800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr12:21989000-21994800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr12:21990200-21995000	Weak transcription	Colon Smooth Muscle	Colon
20	chr12:21991600-21994600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:21991800-21995200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr12:21992200-21997800	Weak transcription	Left Ventricle	heart
23	chr12:21992400-21997400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr12:21993000-21997600	Weak transcription	Fetal Muscle Leg	muscle

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