Variant report

Variant	rs11048289
Chromosome Location	chr12:25982690-25982691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:25982003..25983628-chr12:25985346..25987758,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256440	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10431264	1.00[CHB][hapmap]
rs10505985	1.00[ASN][1000 genomes]
rs10505986	1.00[ASN][1000 genomes]
rs10842627	1.00[ASN][1000 genomes]
rs10842630	1.00[ASN][1000 genomes]
rs10842634	1.00[ASN][1000 genomes]
rs10842635	1.00[ASN][1000 genomes]
rs10842636	1.00[ASN][1000 genomes]
rs10842637	1.00[ASN][1000 genomes]
rs11048300	1.00[ASN][1000 genomes]
rs11048304	1.00[ASN][1000 genomes]
rs11048305	1.00[ASN][1000 genomes]
rs11048309	1.00[ASN][1000 genomes]
rs11048311	1.00[ASN][1000 genomes]
rs11048312	1.00[ASN][1000 genomes]
rs11048315	1.00[ASN][1000 genomes]
rs11048317	1.00[ASN][1000 genomes]
rs11048319	1.00[ASN][1000 genomes]
rs11048323	1.00[ASN][1000 genomes]
rs11048325	1.00[ASN][1000 genomes]
rs11048326	1.00[ASN][1000 genomes]
rs11048328	1.00[ASN][1000 genomes]
rs11048329	1.00[ASN][1000 genomes]
rs11048330	1.00[ASN][1000 genomes]
rs11048331	1.00[ASN][1000 genomes]
rs12368327	1.00[ASN][1000 genomes]
rs12369495	1.00[ASN][1000 genomes]
rs1511008	1.00[ASN][1000 genomes]
rs2341292	1.00[ASN][1000 genomes]
rs56245229	1.00[ASN][1000 genomes]
rs58294161	1.00[ASN][1000 genomes]
rs7134325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086135	1.00[ASN][1000 genomes]
rs73086136	1.00[ASN][1000 genomes]
rs73086141	1.00[ASN][1000 genomes]
rs73088111	1.00[ASN][1000 genomes]
rs7953149	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428585	chr12:25897777-25992287	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25974200-25986400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:25978600-25983400	Weak transcription	Fetal Lung	lung
3	chr12:25979800-25982800	Enhancers	NHDF-Ad	bronchial
4	chr12:25979800-25983200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr12:25980400-25983000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:25980600-25983200	Enhancers	Colon Smooth Muscle	Colon
7	chr12:25981000-25983200	Enhancers	Osteobl	bone
8	chr12:25981000-25983400	Enhancers	NHLF	lung
9	chr12:25981000-25983600	Enhancers	Hela-S3	cervix
10	chr12:25981200-25982800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:25981200-25983000	Enhancers	Right Atrium	heart
12	chr12:25981200-25983200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:25981400-25983200	Enhancers	HUVEC	blood vessel
14	chr12:25981600-25982800	Weak transcription	Aorta	Aorta
15	chr12:25981600-25982800	Weak transcription	Fetal Muscle Leg	muscle
16	chr12:25981600-25983200	Enhancers	Stomach Smooth Muscle	stomach
17	chr12:25981800-25983200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr12:25981800-25996800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:25982000-25983000	Enhancers	NH-A	brain
20	chr12:25982200-25983200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr12:25982200-25984000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr12:25982400-25983800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr12:25982400-25984400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr12:25982600-25983000	Flanking Active TSS	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links