Variant report

Variant	rs73086135
Chromosome Location	chr12:26026160-26026161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10505985	1.00[ASN][1000 genomes]
rs10505986	1.00[ASN][1000 genomes]
rs10842623	0.85[EUR][1000 genomes]
rs10842624	0.85[EUR][1000 genomes]
rs10842627	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10842630	1.00[ASN][1000 genomes]
rs10842634	1.00[ASN][1000 genomes]
rs10842635	1.00[ASN][1000 genomes]
rs10842636	1.00[ASN][1000 genomes]
rs10842637	1.00[ASN][1000 genomes]
rs11048289	1.00[ASN][1000 genomes]
rs11048300	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11048302	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11048303	0.83[EUR][1000 genomes]
rs11048304	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11048305	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11048309	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11048311	1.00[ASN][1000 genomes]
rs11048312	1.00[ASN][1000 genomes]
rs11048315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11048317	1.00[ASN][1000 genomes]
rs11048319	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11048323	1.00[ASN][1000 genomes]
rs11048325	1.00[ASN][1000 genomes]
rs11048326	1.00[ASN][1000 genomes]
rs11048328	1.00[ASN][1000 genomes]
rs11048329	1.00[ASN][1000 genomes]
rs11048330	1.00[ASN][1000 genomes]
rs11048331	1.00[ASN][1000 genomes]
rs12227123	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12306745	0.83[EUR][1000 genomes]
rs12313050	0.83[EUR][1000 genomes]
rs12368327	1.00[ASN][1000 genomes]
rs12369495	1.00[ASN][1000 genomes]
rs1462717	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1511008	1.00[ASN][1000 genomes]
rs56245229	1.00[ASN][1000 genomes]
rs58294161	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66520255	0.83[EUR][1000 genomes]
rs7134325	1.00[ASN][1000 genomes]
rs73086136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088111	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26025000-26027200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:26025600-26026200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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