Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10842622	0.93[ASN][1000 genomes]
rs10842623	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10842627	0.96[EUR][1000 genomes]
rs11048300	0.94[EUR][1000 genomes]
rs11048302	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11048303	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11048304	0.94[EUR][1000 genomes]
rs11048305	0.96[EUR][1000 genomes]
rs11048309	0.95[EUR][1000 genomes]
rs11048315	0.85[EUR][1000 genomes]
rs12227123	0.94[EUR][1000 genomes]
rs12230489	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12306745	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12313050	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12582074	0.91[ASN][1000 genomes]
rs1462717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929496	0.94[ASN][1000 genomes]
rs16929533	0.99[ASN][1000 genomes]
rs16929543	0.99[ASN][1000 genomes]
rs16929569	0.94[ASN][1000 genomes]
rs61539654	0.99[ASN][1000 genomes]
rs66520255	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73086135	0.85[EUR][1000 genomes]
rs73086136	0.85[EUR][1000 genomes]
rs73086141	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv522358	chr12:26006066-26013013	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26006600-26011400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:26008400-26012600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:26008400-26013000	Weak transcription	NHEK	skin
4	chr12:26009000-26015800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:26009000-26017000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:26009400-26012200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:26010000-26012200	Weak transcription	Placenta	Placenta

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