Variant report

Variant	rs11048303
Chromosome Location	chr12:26002695-26002696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26001348..26002904-chr12:26005653..26008250,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IFLTD1-6	chr12:26002215-26002733	l_620_chr12:25988876-25991960_brain

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10505984	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs10842622	0.97[ASN][1000 genomes]
rs10842623	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10842624	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10842626	0.85[AFR][1000 genomes]
rs10842627	0.94[EUR][1000 genomes]
rs11048299	0.81[AFR][1000 genomes]
rs11048300	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11048302	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11048304	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11048305	0.94[EUR][1000 genomes]
rs11048306	0.85[AFR][1000 genomes]
rs11048309	0.93[EUR][1000 genomes]
rs11048315	0.83[EUR][1000 genomes]
rs12227123	0.96[EUR][1000 genomes]
rs12230489	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12306745	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12313050	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12582074	0.96[ASN][1000 genomes]
rs1462717	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1462719	0.85[AFR][1000 genomes]
rs16929496	0.99[ASN][1000 genomes]
rs16929533	0.94[ASN][1000 genomes]
rs16929543	0.94[ASN][1000 genomes]
rs16929569	0.90[ASN][1000 genomes]
rs61539654	0.94[ASN][1000 genomes]
rs66520255	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086135	0.83[EUR][1000 genomes]
rs73086136	0.83[EUR][1000 genomes]
rs73086141	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25997200-26003800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links