Variant report

Variant	rs10842622
Chromosome Location	chr12:25995230-25995231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10842623	0.94[ASN][1000 genomes]
rs10842624	0.93[ASN][1000 genomes]
rs11048302	0.97[ASN][1000 genomes]
rs11048303	0.97[ASN][1000 genomes]
rs12230489	0.89[ASN][1000 genomes]
rs12306745	0.94[ASN][1000 genomes]
rs12313050	0.94[ASN][1000 genomes]
rs12582074	0.99[ASN][1000 genomes]
rs1462717	0.93[ASN][1000 genomes]
rs16929496	0.99[ASN][1000 genomes]
rs16929533	0.91[ASN][1000 genomes]
rs16929543	0.91[ASN][1000 genomes]
rs16929569	0.87[ASN][1000 genomes]
rs61539654	0.91[ASN][1000 genomes]
rs66520255	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25981800-25996800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:25988800-25997800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:25991400-25996200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr12:25991400-25996400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr12:25993400-25996000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:25994200-25996000	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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