Variant report

Variant	rs16929496
Chromosome Location	chr12:25993804-25993805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10842622	0.99[ASN][1000 genomes]
rs10842623	0.96[ASN][1000 genomes]
rs10842624	0.94[ASN][1000 genomes]
rs10842630	0.91[EUR][1000 genomes]
rs11048300	0.88[AFR][1000 genomes]
rs11048302	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11048303	0.99[ASN][1000 genomes]
rs11048304	0.84[AFR][1000 genomes]
rs11048311	0.94[EUR][1000 genomes]
rs11048312	0.89[EUR][1000 genomes]
rs11048317	0.91[EUR][1000 genomes]
rs12230489	0.90[ASN][1000 genomes]
rs12306745	0.96[ASN][1000 genomes]
rs12313050	0.96[ASN][1000 genomes]
rs12582074	0.97[ASN][1000 genomes]
rs1462717	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16929533	0.93[ASN][1000 genomes]
rs16929543	0.93[ASN][1000 genomes]
rs16929569	0.88[ASN][1000 genomes]
rs56245229	0.93[EUR][1000 genomes]
rs61539654	0.93[ASN][1000 genomes]
rs66520255	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25981800-25996800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:25988800-25997800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:25991400-25996200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr12:25991400-25996400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr12:25992200-25994200	Enhancers	HUVEC	blood vessel
6	chr12:25992200-25994400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr12:25992600-25994200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:25992600-25994600	Enhancers	NH-A	brain
9	chr12:25993000-25994200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr12:25993400-25994400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr12:25993400-25996000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:25993600-25994200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:25993800-25994200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr12:25993800-25994200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr12:25993800-25994200	Enhancers	NHDF-Ad	bronchial
16	chr12:25993800-25994400	Enhancers	NHLF	lung
17	chr12:25993800-25994600	Flanking Active TSS	Osteobl	bone
18	chr12:25993800-25994800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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