Variant report

Variant	rs11048291
Chromosome Location	chr12:25985773-25985774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10431264	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11048289	1.00[CHB][hapmap]
rs7134325	1.00[CHB][hapmap]
rs7953149	1.00[CHB][hapmap]
rs7954958	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428585	chr12:25897777-25992287	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25974200-25986400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:25981800-25996800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:25983200-25986800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr12:25983200-25986800	Weak transcription	Osteobl	bone
5	chr12:25983400-25986800	Weak transcription	NHLF	lung
6	chr12:25983600-25986800	Weak transcription	Hela-S3	cervix
7	chr12:25984000-25986800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr12:25984400-25986800	Weak transcription	NHDF-Ad	bronchial
9	chr12:25985400-25986200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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