Variant report

Variant	rs11050679
Chromosome Location	chr12:30296587-30296588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11050678	0.90[ASN][1000 genomes]
rs11050680	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11050681	0.90[ASN][1000 genomes]
rs11050684	1.00[ASN][1000 genomes]
rs11050693	0.96[ASN][1000 genomes]
rs1485424	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16935493	0.96[ASN][1000 genomes]
rs16935496	0.96[ASN][1000 genomes]
rs7134468	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs74080585	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs74080597	0.86[AFR][1000 genomes]
rs74080598	0.85[AFR][1000 genomes]
rs74080599	0.89[AFR][1000 genomes]
rs74080600	0.88[AFR][1000 genomes]
rs74080601	0.89[AFR][1000 genomes]
rs74080602	0.89[AFR][1000 genomes]
rs74082603	0.89[AFR][1000 genomes]
rs74082605	0.89[AFR][1000 genomes]
rs74082610	0.89[AFR][1000 genomes]
rs74082613	0.89[AFR][1000 genomes]
rs74082615	0.89[AFR][1000 genomes]
rs8181733	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948495	chr12:30090771-30344772	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1042081	chr12:30147993-30344670	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541436	chr12:30147993-30344670	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv821695	chr12:30287314-30450174	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1050757	chr12:30288879-30329142	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1035561	chr12:30288879-30336486	Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv19189	chr12:30290207-30296633	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30294400-30297800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:30296400-30296600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links