Variant report
| Variant | rs74080585 |
|---|---|
| Chromosome Location | chr12:30285956-30285957 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11050678 | 0.82[ASN][1000 genomes] |
| rs11050679 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11050680 | 0.92[ASN][1000 genomes] |
| rs11050681 | 0.82[ASN][1000 genomes] |
| rs11050684 | 0.92[ASN][1000 genomes] |
| rs11050693 | 0.88[ASN][1000 genomes] |
| rs1485424 | 0.92[ASN][1000 genomes] |
| rs16935493 | 0.88[ASN][1000 genomes] |
| rs16935496 | 0.88[ASN][1000 genomes] |
| rs59507162 | 1.00[EUR][1000 genomes] |
| rs7134468 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs74080597 | 1.00[EUR][1000 genomes] |
| rs74080599 | 1.00[EUR][1000 genomes] |
| rs74080600 | 1.00[EUR][1000 genomes] |
| rs74080601 | 1.00[EUR][1000 genomes] |
| rs74080602 | 1.00[EUR][1000 genomes] |
| rs74080669 | 1.00[EUR][1000 genomes] |
| rs74080675 | 1.00[EUR][1000 genomes] |
| rs74082603 | 1.00[EUR][1000 genomes] |
| rs74082605 | 1.00[EUR][1000 genomes] |
| rs74082610 | 1.00[EUR][1000 genomes] |
| rs74082613 | 1.00[EUR][1000 genomes] |
| rs74082615 | 1.00[EUR][1000 genomes] |
| rs8181733 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948495 | chr12:30090771-30344772 | ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1042081 | chr12:30147993-30344670 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv541436 | chr12:30147993-30344670 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:30284600-30286200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr12:30285800-30291200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
