Variant report

Variant	rs11050940
Chromosome Location	chr12:30688085-30688086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11050930	0.81[EUR][1000 genomes]
rs11050932	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050934	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050935	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050937	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050945	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12367036	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12370224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12371494	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12371879	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12371987	0.90[ASN][1000 genomes]
rs1682417	0.90[ASN][1000 genomes]
rs16906500	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17485185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60973504	0.90[ASN][1000 genomes]
rs61921072	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61921073	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61921136	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7969450	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv469192	chr12:30678625-30707035	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv558029	chr12:30678625-30707035	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv976029	chr12:30687283-30702050	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30686000-30689400	Weak transcription	Pancreas	Pancrea
2	chr12:30686800-30689400	Weak transcription	Fetal Stomach	stomach
3	chr12:30686800-30690200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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