Variant report

Variant	rs17485185
Chromosome Location	chr12:30686071-30686072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11050930	0.81[EUR][1000 genomes]
rs11050932	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050934	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050935	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050937	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12367036	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12370224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12371494	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12371879	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12371987	0.90[ASN][1000 genomes]
rs1682417	0.90[ASN][1000 genomes]
rs16906500	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60973504	0.90[ASN][1000 genomes]
rs61921072	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61921073	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61921136	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7969450	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv469192	chr12:30678625-30707035	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv558029	chr12:30678625-30707035	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30672600-30686800	Weak transcription	Ovary	ovary
2	chr12:30685600-30687800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:30685800-30686800	Enhancers	Fetal Stomach	stomach
4	chr12:30686000-30686800	Weak transcription	K562	blood
5	chr12:30686000-30689400	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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