Variant report
| Variant | rs11051079 |
|---|---|
| Chromosome Location | chr12:30934758-30934759 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10843839 | 0.85[AMR][1000 genomes] |
| rs10843840 | 0.85[AMR][1000 genomes] |
| rs10843841 | 0.85[AMR][1000 genomes] |
| rs11051078 | 0.85[AMR][1000 genomes] |
| rs11051082 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs11051085 | 0.85[AMR][1000 genomes] |
| rs11051178 | 1.00[AFR][1000 genomes] |
| rs12230092 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12231555 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12231790 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16906797 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2241324 | 1.00[AFR][1000 genomes] |
| rs2352530 | 1.00[AFR][1000 genomes] |
| rs34358138 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35399826 | 1.00[AFR][1000 genomes] |
| rs7137376 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7139052 | 1.00[AFR][1000 genomes] |
| rs7309016 | 1.00[AFR][1000 genomes] |
| rs759771 | 1.00[AFR][1000 genomes] |
| rs7957255 | 1.00[AFR][1000 genomes] |
| rs7980008 | 1.00[AFR][1000 genomes] |
| rs890697 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3343291 | chr12:30455597-30992837 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 2 | nsv832361 | chr12:30794030-30997241 | Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| 3 | nsv949148 | chr12:30800040-31131712 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
| 4 | esv34091 | chr12:30927650-31061815 | Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 37 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:30929600-30935400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
