Variant report

Variant	rs11051082
Chromosome Location	chr12:30935509-30935510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10843839	1.00[AMR][1000 genomes]
rs10843840	1.00[AMR][1000 genomes]
rs10843841	1.00[AMR][1000 genomes]
rs11051078	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11051079	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11051085	1.00[AMR][1000 genomes]
rs11051178	1.00[AFR][1000 genomes]
rs2241324	1.00[AFR][1000 genomes]
rs2352530	1.00[AFR][1000 genomes]
rs35399826	1.00[AFR][1000 genomes]
rs7139052	1.00[AFR][1000 genomes]
rs7309016	1.00[AFR][1000 genomes]
rs759771	1.00[AFR][1000 genomes]
rs7957255	1.00[AFR][1000 genomes]
rs7980008	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832361	chr12:30794030-30997241	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv949148	chr12:30800040-31131712	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv34091	chr12:30927650-31061815	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30934800-30936000	Enhancers	Fetal Muscle Leg	muscle
2	chr12:30934800-30936200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr12:30934800-30936400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr12:30935400-30935800	Enhancers	HSMMtube	muscle
5	chr12:30935400-30936000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr12:30935400-30936000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:30935400-30936000	Enhancers	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links