Variant report

Variant	rs11051881
Chromosome Location	chr12:32412079-32412080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32111261..32114014-chr12:32410835..32414194,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174718	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10844162	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10844168	0.88[ASN][1000 genomes]
rs11051890	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11051898	0.88[ASN][1000 genomes]
rs12317383	0.93[EUR][1000 genomes]
rs12578420	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12579050	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12579433	0.85[EUR][1000 genomes]
rs12828628	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13328922	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34649333	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4001803	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61926959	0.88[ASN][1000 genomes]
rs67559213	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs67607066	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7295546	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2751096	chr12:32280340-32702784	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv558171	chr12:32287259-32559693	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832366	chr12:32328559-32511360	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32393600-32423800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr12:32394000-32424200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr12:32394400-32423800	Weak transcription	NH-A	brain
4	chr12:32394600-32414400	Weak transcription	HUVEC	blood vessel
5	chr12:32402000-32417800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr12:32402000-32424000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:32402400-32423600	Weak transcription	Osteobl	bone
8	chr12:32403000-32417800	Weak transcription	Brain Angular Gyrus	brain
9	chr12:32403000-32417800	Weak transcription	Fetal Stomach	stomach
10	chr12:32403000-32424400	Weak transcription	HSMMtube	muscle
11	chr12:32403200-32413400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:32403200-32417600	Weak transcription	NHDF-Ad	bronchial
13	chr12:32403200-32424000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:32403200-32424400	Weak transcription	HSMM	muscle
15	chr12:32403400-32413800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr12:32403400-32423600	Weak transcription	Brain Germinal Matrix	brain
17	chr12:32403800-32414400	Weak transcription	HMEC	breast
18	chr12:32405000-32423800	Weak transcription	Left Ventricle	heart
19	chr12:32405400-32414200	Weak transcription	Spleen	Spleen
20	chr12:32405400-32417800	Weak transcription	Thymus	Thymus
21	chr12:32405600-32423200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr12:32405600-32423800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr12:32405800-32413200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr12:32406000-32418000	Weak transcription	Ovary	ovary
25	chr12:32406200-32417800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr12:32406600-32417800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr12:32407000-32423600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr12:32407400-32417800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr12:32407800-32423400	Weak transcription	Brain Anterior Caudate	brain
30	chr12:32408200-32424000	Weak transcription	Hela-S3	cervix
31	chr12:32408200-32425600	Weak transcription	Primary T cells from cord blood	blood
32	chr12:32408400-32413800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr12:32409400-32423600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr12:32409400-32423800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr12:32409600-32414600	Weak transcription	Fetal Thymus	thymus
36	chr12:32411200-32413200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr12:32411200-32413600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr12:32411200-32413600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr12:32411200-32413600	Weak transcription	NHEK	skin
40	chr12:32411200-32414200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr12:32411200-32414400	Weak transcription	Primary B cells from peripheral blood	blood
42	chr12:32411200-32416600	Weak transcription	Primary B cells from cord blood	blood
43	chr12:32411200-32417200	Weak transcription	Dnd41	blood
44	chr12:32411200-32423600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr12:32411200-32423600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr12:32411200-32426200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr12:32411400-32412200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr12:32411400-32412200	Flanking Active TSS	K562	blood
49	chr12:32411400-32424200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr12:32411600-32424200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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