Variant report

Variant	rs13328922
Chromosome Location	chr12:32424423-32424424
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32419072..32421543-chr12:32422418..32424830,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10844159	0.88[JPT][hapmap]
rs10844162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844168	0.93[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs11051881	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11051885	1.00[ASW][hapmap]
rs11051890	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051898	0.93[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.91[ASN][1000 genomes]
rs12317383	0.93[EUR][1000 genomes]
rs12578420	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12579050	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12579433	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1260708	1.00[ASW][hapmap]
rs12828628	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1673857	1.00[ASW][hapmap]
rs34649333	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4001803	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61926959	0.91[ASN][1000 genomes]
rs67559213	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs67607066	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7295546	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2751096	chr12:32280340-32702784	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv558171	chr12:32287259-32559693	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832366	chr12:32328559-32511360	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32408200-32425600	Weak transcription	Primary T cells from cord blood	blood
2	chr12:32411200-32426200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr12:32412600-32426000	Weak transcription	K562	blood
4	chr12:32413400-32437600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:32418400-32426400	Weak transcription	Fetal Muscle Leg	muscle
6	chr12:32418600-32428400	Weak transcription	Ovary	ovary
7	chr12:32419200-32425600	Weak transcription	Thymus	Thymus
8	chr12:32419200-32426600	Weak transcription	Dnd41	blood
9	chr12:32421000-32426000	Weak transcription	Pancreas	Pancrea
10	chr12:32421400-32426200	Weak transcription	Aorta	Aorta
11	chr12:32422200-32427400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr12:32423200-32424800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr12:32423400-32424800	Enhancers	Brain Anterior Caudate	brain
14	chr12:32423400-32425000	Enhancers	Brain Cingulate Gyrus	brain
15	chr12:32423400-32427000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr12:32423600-32424600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr12:32423600-32424600	Enhancers	Brain Germinal Matrix	brain
18	chr12:32423600-32424800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr12:32423600-32424800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:32423600-32424800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr12:32423600-32424800	Enhancers	Brain Angular Gyrus	brain
22	chr12:32423600-32425000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr12:32423600-32425200	Enhancers	Osteobl	bone
24	chr12:32423600-32425400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr12:32423600-32426000	Enhancers	Primary B cells from cord blood	blood
26	chr12:32423600-32427200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr12:32423600-32427200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr12:32423600-32427400	Enhancers	Primary B cells from peripheral blood	blood
29	chr12:32423800-32424600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr12:32423800-32424600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr12:32423800-32424600	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr12:32423800-32424600	Enhancers	NHDF-Ad	bronchial
33	chr12:32423800-32424800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr12:32423800-32424800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr12:32423800-32424800	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr12:32423800-32424800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr12:32423800-32424800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr12:32423800-32424800	Enhancers	Brain Hippocampus Middle	brain
39	chr12:32423800-32424800	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr12:32423800-32424800	Enhancers	Brain Substantia Nigra	brain
41	chr12:32423800-32425000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr12:32423800-32425200	Enhancers	Fetal Kidney	kidney
43	chr12:32423800-32425200	Enhancers	Fetal Stomach	stomach
44	chr12:32423800-32427200	Enhancers	Fetal Intestine Large	intestine
45	chr12:32423800-32427800	Enhancers	Primary hematopoietic stem cells	blood
46	chr12:32424000-32424600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr12:32424000-32424600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr12:32424000-32424600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr12:32424000-32424600	Enhancers	Hela-S3	cervix
50	chr12:32424000-32424800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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