Variant report

Variant	rs11051889
Chromosome Location	chr12:32423612-32423613
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32419072..32421543-chr12:32422418..32424830,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11051864	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11051868	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11051869	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11051871	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11051873	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11051874	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11051878	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11051880	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11051882	1.00[CEU][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11051883	1.00[CEU][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11051891	0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs11051893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051894	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11051895	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11051902	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11051903	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11051904	0.93[ASN][1000 genomes]
rs11051905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11051906	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11051911	0.93[ASN][1000 genomes]
rs11830407	0.86[CHB][hapmap]
rs11830737	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11831258	1.00[CEU][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12228244	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12228917	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12230502	0.93[ASN][1000 genomes]
rs12231775	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12231791	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12231813	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12231822	0.88[ASN][1000 genomes]
rs16919510	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16919557	1.00[CEU][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16919634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16919660	0.86[CHB][hapmap]
rs16919663	0.86[CHB][hapmap]
rs3789974	0.85[CHB][hapmap]
rs3844105	0.86[CHB][hapmap]
rs58654691	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58836617	0.93[ASN][1000 genomes]
rs59655920	0.93[ASN][1000 genomes]
rs60591339	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60781342	0.93[ASN][1000 genomes]
rs60996971	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61005955	0.93[ASN][1000 genomes]
rs61286541	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61560167	0.93[ASN][1000 genomes]
rs6488040	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs6488041	0.87[ASN][1000 genomes]
rs7138319	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7300174	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7310041	0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs74072028	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7958104	0.94[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2751096	chr12:32280340-32702784	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv558171	chr12:32287259-32559693	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832366	chr12:32328559-32511360	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32393600-32423800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr12:32394000-32424200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr12:32394400-32423800	Weak transcription	NH-A	brain
4	chr12:32402000-32424000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:32403000-32424400	Weak transcription	HSMMtube	muscle
6	chr12:32403200-32424000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:32403200-32424400	Weak transcription	HSMM	muscle
8	chr12:32405000-32423800	Weak transcription	Left Ventricle	heart
9	chr12:32405600-32423800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr12:32408200-32424000	Weak transcription	Hela-S3	cervix
11	chr12:32408200-32425600	Weak transcription	Primary T cells from cord blood	blood
12	chr12:32409400-32423800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:32411200-32426200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr12:32411400-32424200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:32411600-32424200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:32412600-32424000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr12:32412600-32426000	Weak transcription	K562	blood
18	chr12:32413400-32437600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr12:32414400-32423800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr12:32414600-32423800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr12:32418200-32423800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr12:32418200-32423800	Weak transcription	Spleen	Spleen
23	chr12:32418400-32423800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr12:32418400-32423800	Weak transcription	Brain Hippocampus Middle	brain
25	chr12:32418400-32426400	Weak transcription	Fetal Muscle Leg	muscle
26	chr12:32418600-32423800	Weak transcription	Fetal Stomach	stomach
27	chr12:32418600-32424000	Weak transcription	Fetal Intestine Small	intestine
28	chr12:32418600-32428400	Weak transcription	Ovary	ovary
29	chr12:32419000-32423800	Weak transcription	HUVEC	blood vessel
30	chr12:32419200-32423800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr12:32419200-32423800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr12:32419200-32423800	Weak transcription	NHDF-Ad	bronchial
33	chr12:32419200-32425600	Weak transcription	Thymus	Thymus
34	chr12:32419200-32426600	Weak transcription	Dnd41	blood
35	chr12:32419400-32423800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr12:32420000-32423800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr12:32420000-32423800	Weak transcription	GM12878-XiMat	blood
38	chr12:32420200-32424000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr12:32420400-32424000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr12:32420800-32423800	Weak transcription	Fetal Kidney	kidney
41	chr12:32421000-32426000	Weak transcription	Pancreas	Pancrea
42	chr12:32421400-32423800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr12:32421400-32423800	Weak transcription	Fetal Intestine Large	intestine
44	chr12:32421400-32426200	Weak transcription	Aorta	Aorta
45	chr12:32422200-32427400	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr12:32422800-32423800	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr12:32422800-32424000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr12:32423000-32423800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr12:32423200-32424800	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr12:32423400-32423800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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