Variant report

Variant	rs11051903
Chromosome Location	chr12:32439556-32439557
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32433812..32435495-chr12:32439244..32441498,2	MCF-7	breast:
2	chr12:32429617..32432029-chr12:32437705..32440529,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11051868	0.80[ASN][1000 genomes]
rs11051869	0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs11051871	0.82[ASN][1000 genomes]
rs11051874	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs11051878	0.92[ASN][1000 genomes]
rs11051880	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11051882	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs11051883	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs11051889	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11051891	0.88[CEU][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11051893	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11051894	0.90[ASN][1000 genomes]
rs11051895	0.99[ASN][1000 genomes]
rs11051902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051904	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051906	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11051911	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11830407	0.85[CHB][hapmap]
rs11830737	0.99[ASN][1000 genomes]
rs11831258	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs12228244	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12228917	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12230502	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12231775	0.88[CEU][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12231791	0.92[ASN][1000 genomes]
rs12231813	0.82[ASN][1000 genomes]
rs12231822	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16919557	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs16919634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919660	0.85[CHB][hapmap]
rs16919663	0.85[CHB][hapmap]
rs3789974	0.84[CHB][hapmap]
rs3844105	0.85[CHB][hapmap]
rs58836617	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59655920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60781342	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60996971	0.82[ASN][1000 genomes]
rs61005955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61286541	0.81[ASN][1000 genomes]
rs61560167	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488040	0.88[CEU][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6488041	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7138319	0.88[CEU][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7300174	0.88[CEU][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7310041	0.88[CEU][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73310734	0.85[EUR][1000 genomes]
rs73310736	0.85[EUR][1000 genomes]
rs74072028	0.93[ASN][1000 genomes]
rs7958104	0.88[CEU][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2751096	chr12:32280340-32702784	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv558171	chr12:32287259-32559693	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832366	chr12:32328559-32511360	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32426600-32443400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:32426800-32442800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr12:32426800-32443200	Weak transcription	NH-A	brain
4	chr12:32426800-32446800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr12:32427000-32443400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr12:32427000-32458600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr12:32427000-32459400	Weak transcription	Aorta	Aorta
8	chr12:32427000-32463000	Weak transcription	NHLF	lung
9	chr12:32427200-32463000	Weak transcription	Fetal Intestine Small	intestine
10	chr12:32427400-32445200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:32427600-32454400	Weak transcription	Primary B cells from cord blood	blood
12	chr12:32434800-32443000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:32435200-32448200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr12:32436200-32440200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr12:32436400-32439800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr12:32436400-32440600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr12:32437200-32439800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr12:32437200-32440000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr12:32437400-32440000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr12:32438000-32442800	Weak transcription	Osteobl	bone
21	chr12:32438200-32443200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr12:32438200-32443200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr12:32438200-32443200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr12:32438200-32449600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr12:32438800-32443200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr12:32438800-32443400	Weak transcription	Ovary	ovary
27	chr12:32438800-32449600	Weak transcription	Fetal Brain Female	brain
28	chr12:32439000-32440200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr12:32439000-32440200	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr12:32439400-32439600	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links