Variant report

Variant	rs11052102
Chromosome Location	chr12:32764667-32764668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10161100	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10437768	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs11052065	1.00[AMR][1000 genomes]
rs12300443	0.84[YRI][hapmap]
rs12300564	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12300580	0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12300682	1.00[AMR][1000 genomes]
rs1995226	0.81[YRI][hapmap]
rs2892683	1.00[AMR][1000 genomes]
rs7975637	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv527786	chr12:32761558-32771912	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32713000-32780400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr12:32713400-32796200	Weak transcription	Fetal Lung	lung
3	chr12:32720000-32764800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:32720200-32778400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:32722600-32764800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr12:32722600-32764800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr12:32722600-32764800	Weak transcription	Psoas Muscle	Psoas
8	chr12:32722600-32779400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr12:32725200-32778600	Weak transcription	Fetal Brain Male	brain
10	chr12:32733200-32764800	Weak transcription	Esophagus	oesophagus
11	chr12:32735400-32765000	Weak transcription	Small Intestine	intestine
12	chr12:32741800-32769600	Weak transcription	Stomach Mucosa	stomach
13	chr12:32742000-32764800	Weak transcription	Spleen	Spleen
14	chr12:32742400-32765600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr12:32744200-32797600	Weak transcription	Fetal Heart	heart
16	chr12:32744800-32765000	Weak transcription	Brain Substantia Nigra	brain
17	chr12:32749000-32764800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr12:32750000-32765000	Strong transcription	Adipose Nuclei	Adipose
19	chr12:32750000-32770400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr12:32753000-32774200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr12:32754200-32795200	Weak transcription	Primary B cells from cord blood	blood
22	chr12:32754600-32766800	Weak transcription	NH-A	brain
23	chr12:32755000-32764800	Weak transcription	Colonic Mucosa	Colon
24	chr12:32755000-32775800	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr12:32755400-32800600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr12:32755600-32765200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr12:32756200-32789800	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr12:32756800-32767400	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr12:32757000-32783400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr12:32757400-32767400	Strong transcription	Duodenum Mucosa	Duodenum
31	chr12:32757400-32799600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr12:32757600-32767600	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr12:32757600-32798000	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr12:32757800-32764800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr12:32757800-32765000	Weak transcription	Brain Angular Gyrus	brain
36	chr12:32757800-32767200	Weak transcription	NHDF-Ad	bronchial
37	chr12:32757800-32771200	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr12:32757800-32778800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr12:32757800-32797800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr12:32758400-32799400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr12:32758600-32780800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr12:32758600-32797800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr12:32758600-32799600	Strong transcription	Liver	Liver
44	chr12:32758600-32800400	Strong transcription	HSMM	muscle
45	chr12:32758800-32770600	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr12:32758800-32799600	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr12:32759400-32767600	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr12:32759400-32769600	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr12:32759600-32764800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr12:32759600-32767800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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