Variant report

Variant	rs2892683
Chromosome Location	chr12:32894702-32894703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32889956..32891703-chr12:32893530..32895447,2	K562	blood:
2	chr12:32894196..32896638-chr12:32898861..32900958,2	K562	blood:

Variant related genes	Relation type
ENSG00000087470	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10161100	1.00[AMR][1000 genomes]
rs10437768	1.00[AMR][1000 genomes]
rs11052102	1.00[AMR][1000 genomes]
rs12300564	1.00[AMR][1000 genomes]
rs12300580	1.00[AMR][1000 genomes]
rs12300682	1.00[AMR][1000 genomes]
rs7975637	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1051667	chr12:32871860-32919673	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1042661	chr12:32871860-32928833	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1050779	chr12:32872999-32921973	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv532334	chr12:32884789-33034791	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32835000-32902600	Weak transcription	Gastric	stomach
2	chr12:32835000-32902800	Weak transcription	Small Intestine	intestine
3	chr12:32851400-32906800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:32853000-32902200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:32859600-32895000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr12:32862600-32896400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr12:32865000-32904400	Weak transcription	Stomach Mucosa	stomach
8	chr12:32871200-32904600	Strong transcription	Dnd41	blood
9	chr12:32871400-32905800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr12:32871400-32906000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr12:32871400-32906000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr12:32871400-32906000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr12:32871400-32906200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr12:32871400-32906200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr12:32871400-32906600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:32871400-32906600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:32871400-32906800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr12:32871400-32907000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr12:32871800-32895400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr12:32876800-32906000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr12:32878400-32905600	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr12:32878600-32904600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr12:32878800-32906200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr12:32879000-32906800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr12:32879200-32906000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr12:32879600-32900600	Weak transcription	Pancreas	Pancrea
27	chr12:32879800-32896400	Weak transcription	Fetal Brain Male	brain
28	chr12:32880800-32906800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr12:32882200-32905000	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr12:32882800-32906000	Strong transcription	HSMM	muscle
31	chr12:32883400-32906400	Strong transcription	Fetal Thymus	thymus
32	chr12:32883400-32906600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr12:32883400-32907200	Strong transcription	Primary B cells from peripheral blood	blood
34	chr12:32883400-32907200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr12:32883600-32906400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr12:32883800-32897400	Strong transcription	GM12878-XiMat	blood
37	chr12:32883800-32906800	Strong transcription	Liver	Liver
38	chr12:32883800-32906800	Strong transcription	A549	lung
39	chr12:32883800-32907000	Strong transcription	Placenta	Placenta
40	chr12:32884000-32904000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr12:32884000-32906000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr12:32884000-32906800	Strong transcription	NH-A	brain
43	chr12:32884200-32906800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr12:32884800-32895000	Weak transcription	Right Ventricle	heart
45	chr12:32884800-32907800	Weak transcription	Esophagus	oesophagus
46	chr12:32885600-32906400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr12:32886600-32905400	Strong transcription	HepG2	liver
48	chr12:32886600-32905800	Strong transcription	HUVEC	blood vessel
49	chr12:32886600-32906400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr12:32886800-32906600	Strong transcription	Osteobl	bone

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