Variant report

Variant	rs11052256
Chromosome Location	chr12:32960664-32960665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10743803	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10772008	0.85[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10844348	0.88[ASN][1000 genomes]
rs10844364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052259	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052262	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1114701	0.94[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12821727	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1840396	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1902140	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2124152	0.95[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2389107	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs2389108	0.89[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2892685	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4272862	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4931044	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs4931045	0.83[EUR][1000 genomes]
rs4931652	0.88[ASN][1000 genomes]
rs6488095	0.82[EUR][1000 genomes]
rs6488097	0.81[GIH][hapmap];0.83[AMR][1000 genomes]
rs7138966	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7296570	0.86[ASN][1000 genomes]
rs7314621	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7962334	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs7975824	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv532334	chr12:32884789-33034791	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32940800-32961800	Weak transcription	Colonic Mucosa	Colon
2	chr12:32941800-33033400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr12:32943800-33026800	Weak transcription	Fetal Kidney	kidney
4	chr12:32944200-32989400	Weak transcription	Hela-S3	cervix
5	chr12:32945800-32972400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr12:32946000-32973600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr12:32946200-32961400	Weak transcription	HepG2	liver
8	chr12:32946600-32967200	Weak transcription	Stomach Mucosa	stomach
9	chr12:32949200-32961400	Weak transcription	Fetal Stomach	stomach
10	chr12:32949200-32961400	Weak transcription	Pancreas	Pancrea
11	chr12:32949200-32961800	Weak transcription	Gastric	stomach
12	chr12:32949200-32975200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr12:32949200-32987000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr12:32949200-33007800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr12:32953600-32960800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:32953600-32961600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr12:32953800-32961400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr12:32953800-32961600	Weak transcription	Fetal Intestine Large	intestine
19	chr12:32954200-32963400	Weak transcription	HMEC	breast
20	chr12:32954400-32961800	Weak transcription	Left Ventricle	heart
21	chr12:32954400-32962000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr12:32954400-32962000	Weak transcription	Right Ventricle	heart
23	chr12:32954400-32968800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr12:32955000-32961400	Weak transcription	Fetal Heart	heart
25	chr12:32955000-32961400	Weak transcription	NHEK	skin
26	chr12:32955400-32962000	Weak transcription	Liver	Liver
27	chr12:32955400-32962600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr12:32955600-32960800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr12:32955600-32961400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr12:32955600-32961400	Weak transcription	Placenta	Placenta
31	chr12:32955600-32961600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr12:32956000-32961400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr12:32956400-32960800	Weak transcription	Fetal Intestine Small	intestine
34	chr12:32957800-32961400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr12:32958600-32962000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr12:32959000-32962200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr12:32959000-32965000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr12:32960000-32961000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr12:32960200-32969200	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links