Variant report
| Variant | rs11052385 |
|---|---|
| Chromosome Location | chr12:33176127-33176128 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1032702 | 0.82[EUR][1000 genomes] |
| rs1032703 | 0.82[EUR][1000 genomes] |
| rs1032704 | 0.82[EUR][1000 genomes] |
| rs10844428 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11052390 | 0.86[EUR][1000 genomes] |
| rs11052399 | 0.84[EUR][1000 genomes] |
| rs11608737 | 0.84[EUR][1000 genomes] |
| rs1353934 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1353935 | 0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1500073 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1909610 | 0.82[EUR][1000 genomes] |
| rs1909611 | 0.82[EUR][1000 genomes] |
| rs4931672 | 0.83[EUR][1000 genomes] |
| rs4931675 | 0.83[EUR][1000 genomes] |
| rs7295724 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7305861 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7306057 | 0.83[EUR][1000 genomes] |
| rs7315188 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7977438 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7977579 | 0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs904640 | 0.83[EUR][1000 genomes] |
| rs9738114 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9739928 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs985876 | 0.84[EUR][1000 genomes] |
| rs985877 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530421 | chr12:32825335-33465991 | Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv832367 | chr12:33063644-33298967 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039909 | chr12:33132909-33244419 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1053849 | chr12:33132909-33279169 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:33175000-33176800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr12:33175600-33176200 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
