Variant report

Variant	rs1032704
Chromosome Location	chr12:33131408-33131409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1032702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1032703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844411	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10844428	0.91[EUR][1000 genomes]
rs11052385	0.82[EUR][1000 genomes]
rs11052390	0.90[EUR][1000 genomes]
rs11052399	0.89[EUR][1000 genomes]
rs11052409	0.82[EUR][1000 genomes]
rs11052413	0.82[EUR][1000 genomes]
rs11608737	0.89[EUR][1000 genomes]
rs1353934	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1353935	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1500073	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1846638	0.93[CEU][hapmap];0.82[CHB][hapmap]
rs1909610	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35969824	0.90[EUR][1000 genomes]
rs4318054	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4931672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4931675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488115	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7295724	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7305797	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7305861	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7306057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7306202	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7315188	0.96[EUR][1000 genomes]
rs7977438	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7977579	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs904640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9738114	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9739928	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs985876	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs985877	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33131000-33131600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:33131000-33131600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr12:33131000-33131600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr12:33131000-33131600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr12:33131400-33131600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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