Variant report

Variant	rs11052413
Chromosome Location	chr12:33206638-33206639
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1032702	0.82[EUR][1000 genomes]
rs1032703	0.82[EUR][1000 genomes]
rs1032704	0.82[EUR][1000 genomes]
rs10844428	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11052390	0.89[EUR][1000 genomes]
rs11052399	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11052409	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052421	0.81[EUR][1000 genomes]
rs11608737	0.88[EUR][1000 genomes]
rs1353934	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1353935	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1500073	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1846638	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1909610	0.82[EUR][1000 genomes]
rs1909611	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs4318054	0.84[CEU][hapmap];0.82[CHB][hapmap]
rs4931054	0.82[AMR][1000 genomes]
rs4931672	0.82[EUR][1000 genomes]
rs4931675	0.82[EUR][1000 genomes]
rs7295724	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7305797	0.82[CEU][hapmap]
rs7305861	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7306057	0.84[CEU][hapmap];0.82[CHB][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes]
rs7315188	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7977438	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7977579	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs904640	0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs9738114	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9739928	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs985876	0.82[EUR][1000 genomes]
rs985877	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1039909	chr12:33132909-33244419	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053849	chr12:33132909-33279169	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1044931	chr12:33179957-33307362	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33201600-33209200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:33206200-33207000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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