Variant report

Variant	rs10844411
Chromosome Location	chr12:33125495-33125496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1032702	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1032703	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1032704	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10844428	0.88[EUR][1000 genomes]
rs11052390	0.87[EUR][1000 genomes]
rs11052399	0.85[EUR][1000 genomes]
rs11608737	0.85[EUR][1000 genomes]
rs1353934	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1353935	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1500073	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1846638	0.86[CEU][hapmap]
rs1909610	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1909611	0.93[CEU][hapmap];0.84[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35969824	0.91[EUR][1000 genomes]
rs4318054	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4931672	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4931675	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6488115	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7295724	0.89[EUR][1000 genomes]
rs7305797	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7305861	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7306057	0.92[CEU][hapmap];0.84[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7306202	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7315188	0.92[EUR][1000 genomes]
rs7977438	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7977579	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs904640	0.92[CEU][hapmap];0.84[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9738114	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9739928	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs985876	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs985877	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33124800-33125600	Enhancers	Esophagus	oesophagus

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