Variant report

Variant	rs11053150
Chromosome Location	chr12:9950834-9950835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:9901213..9901752-chr12:9950468..9951334,2	MCF-7	breast:
2	chr12:9899277..9916007-chr12:9939474..9959569,108	K562	blood:
3	chr12:9937628..9939734-chr12:9949484..9951679,2	K562	blood:
4	chr12:9921450..9923260-chr12:9950246..9952322,2	K562	blood:
5	chr12:9903167..9904499-chr12:9949360..9951288,15	MCF-7	breast:
6	chr12:9901140..9901915-chr12:9950375..9951199,4	MCF-7	breast:
7	chr12:9903202..9904447-chr12:9950005..9951021,6	MCF-7	breast:
8	chr12:9903015..9904410-chr12:9949927..9951349,11	K562	blood:
9	chr12:9901100..9927208-chr12:9932356..9954328,123	K562	blood:

No data

Variant related genes	Relation type
ENSG00000110848	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10128846	0.80[CEU][hapmap]
rs10844836	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053171	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12305990	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34322434	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35701967	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297375	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7299885	0.84[EUR][1000 genomes]
rs7306809	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7310926	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7979620	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3377937	chr12:9938734-9962518	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9945600-9951000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr12:9947600-9951200	Enhancers	Primary B cells from cord blood	blood
3	chr12:9947600-9951400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr12:9947800-9951200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:9948600-9951000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr12:9949400-9951000	Enhancers	Dnd41	blood
7	chr12:9949400-9951000	Enhancers	HUVEC	blood vessel
8	chr12:9949800-9951000	Enhancers	Primary hematopoietic stem cells	blood
9	chr12:9949800-9951000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:9949800-9951000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr12:9949800-9951000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr12:9949800-9951000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr12:9950000-9951000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr12:9950000-9951000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr12:9950200-9951000	Enhancers	Primary T cells from cord blood	blood
16	chr12:9950200-9951400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:9950400-9951000	Enhancers	Primary B cells from peripheral blood	blood
18	chr12:9950600-9951000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr12:9950600-9951000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr12:9950600-9951000	Enhancers	Fetal Thymus	thymus
21	chr12:9950800-9951000	Enhancers	Aorta	Aorta

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