Variant report

Variant	rs7297375
Chromosome Location	chr12:9970124-9970125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10844836	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10844837	0.84[ASW][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.89[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11053150	1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11053171	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12305990	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs34322434	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35701967	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7299885	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7306809	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7310926	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7297375	KLRC4	cis	parietal	SCAN
rs7297375	TNFRSF1A	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9967200-9972600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr12:9967200-9972800	Weak transcription	Spleen	Spleen
3	chr12:9967400-9970200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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