Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr12:10313342-10313528	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr12:10313368-10313620	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr12:10312587-10314323	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
OLR1	TF binding region

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11053645	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11611438	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11611453	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34163097	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35688880	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv898758	chr12:10309477-10318497	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10307000-10318600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr12:10307000-10319800	Weak transcription	Right Atrium	heart
3	chr12:10311200-10315000	Enhancers	Primary B cells from cord blood	blood
4	chr12:10311400-10313600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
5	chr12:10311400-10313600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr12:10311600-10316200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:10312800-10313600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:10312800-10313600	Enhancers	Colon Smooth Muscle	Colon
9	chr12:10312800-10313600	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr12:10312800-10313800	Enhancers	Fetal Stomach	stomach
11	chr12:10312800-10314400	Enhancers	Primary B cells from peripheral blood	blood
12	chr12:10313200-10313600	Enhancers	Rectal Smooth Muscle	rectum
13	chr12:10313200-10313800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr12:10313200-10313800	Enhancers	NHEK	skin
15	chr12:10313200-10317600	Weak transcription	Placenta	Placenta
16	chr12:10313400-10313600	Enhancers	Primary hematopoietic stem cells	blood
17	chr12:10313400-10313600	Enhancers	Brain Anterior Caudate	brain
18	chr12:10313400-10313600	Flanking Active TSS	Fetal Heart	heart
19	chr12:10313400-10313600	Enhancers	Hela-S3	cervix
20	chr12:10313400-10313800	Flanking Active TSS	GM12878-XiMat	blood

Quick Search: