Variant report

Variant	rs35688880
Chromosome Location	chr12:10324431-10324432
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11053645	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11053646	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11611438	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11611453	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34163097	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10319200-10326200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:10321800-10324800	Weak transcription	NHLF	lung
3	chr12:10321800-10331200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:10322000-10327600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:10322800-10325400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr12:10323000-10327200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:10323400-10325200	Active TSS	Placenta	Placenta
8	chr12:10323400-10325400	Flanking Active TSS	Hela-S3	cervix
9	chr12:10323400-10327400	Weak transcription	HMEC	breast
10	chr12:10323400-10327400	Weak transcription	NHEK	skin
11	chr12:10324000-10324800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr12:10324400-10324800	Enhancers	Primary B cells from cord blood	blood
13	chr12:10324400-10325200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:10324400-10325400	Enhancers	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links