Variant report

Variant	rs11053654
Chromosome Location	chr12:10324381-10324382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF2	chr12:10324305-10325173	Hela-S3	cervix:	n/a	n/a
2	RCOR1	chr12:10324235-10325261	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr12:10321554-10325230	Hela-S3	cervix:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OLR1-4	chr12:10324335-10324461	l_608_chr12:10324334-10335090_whiteBloodCell

Variant related genes	Relation type
OLR1	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1050283	0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1050286	0.85[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10505755	0.89[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10845054	0.84[ASN][1000 genomes]
rs10845056	0.94[ASN][1000 genomes]
rs11053641	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11053643	0.95[ASN][1000 genomes]
rs11053644	0.95[ASN][1000 genomes]
rs11053647	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11053648	0.81[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11053649	0.87[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11053650	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11053651	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11608874	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11609310	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11615002	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11615035	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11831267	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12230161	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12231585	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12819932	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12822177	0.86[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13306593	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17174597	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17174598	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2171602	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2537777	0.82[CEU][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs2537778	0.81[CEU][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs2537779	0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs2634164	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34874375	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34908088	0.94[ASN][1000 genomes]
rs35547206	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3736232	0.86[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3736233	0.89[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3736234	0.89[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3736235	0.89[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3816844	0.89[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3994135	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4482119	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4482120	0.93[ASN][1000 genomes]
rs4495966	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4495967	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4764299	1.00[CEU][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6488265	0.86[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs7296800	0.84[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs7300650	0.81[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs7315498	0.81[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10319200-10326200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:10321800-10324800	Weak transcription	NHLF	lung
3	chr12:10321800-10331200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:10322000-10327600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:10322200-10324400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:10322800-10325400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:10323000-10327200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:10323200-10324400	Active TSS	Brain Hippocampus Middle	brain
9	chr12:10323200-10324400	Weak transcription	A549	lung
10	chr12:10323400-10325200	Active TSS	Placenta	Placenta
11	chr12:10323400-10325400	Flanking Active TSS	Hela-S3	cervix
12	chr12:10323400-10327400	Weak transcription	HMEC	breast
13	chr12:10323400-10327400	Weak transcription	NHEK	skin
14	chr12:10324000-10324800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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