Variant report

Variant	rs11053641
Chromosome Location	chr12:10306276-10306277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:10305940..10306484-chr12:10342703..10343621,2	MCF-7	breast:
2	chr12:10305944..10306449-chr12:10714647..10715601,2	MCF-7	breast:
3	chr12:10305922..10306441-chr12:10343128..10344030,2	K562	blood:
4	chr12:10305467..10306793-chr12:10342493..10344173,14	MCF-7	breast:
5	chr12:10305977..10306953-chr12:10328333..10329049,2	MCF-7	breast:
6	chr12:10305112..10307480-chr12:10310212..10312398,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1050283	0.88[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1050286	0.96[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10505755	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10845051	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10845054	0.98[ASN][1000 genomes]
rs10845056	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11053643	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11053644	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11053647	0.92[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11053648	0.92[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11053649	0.93[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11053650	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11053651	0.87[ASN][1000 genomes]
rs11053654	0.81[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11608874	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11609310	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11615002	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11615035	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11831267	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12230161	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12231585	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12819932	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12822177	0.88[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13306593	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17174597	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17174598	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2171602	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2537777	0.91[JPT][hapmap]
rs2537778	0.91[JPT][hapmap]
rs2537779	0.92[JPT][hapmap]
rs34874375	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34908088	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35547206	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3736232	0.96[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3736233	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3736234	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3736235	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3816844	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3994135	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4482119	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4482120	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4495966	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4495967	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4764299	0.84[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs6488265	0.93[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7296800	0.92[JPT][hapmap]
rs7300650	0.91[JPT][hapmap]
rs7315498	0.91[JPT][hapmap]
rs7959064	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10305600-10306600	Active TSS	Fetal Brain Male	brain
2	chr12:10305600-10307000	Active TSS	Brain Angular Gyrus	brain
3	chr12:10305600-10307000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr12:10305800-10306400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:10305800-10306400	Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr12:10305800-10306400	Active TSS	Primary T cells from cord blood	blood
7	chr12:10305800-10306400	Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr12:10305800-10306400	Active TSS	Thymus	Thymus
9	chr12:10305800-10306600	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr12:10305800-10306600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr12:10305800-10306600	Active TSS	Brain Germinal Matrix	brain
12	chr12:10305800-10306600	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr12:10305800-10306600	Flanking Active TSS	Fetal Muscle Leg	muscle
14	chr12:10305800-10306600	Active TSS	Rectal Smooth Muscle	rectum
15	chr12:10305800-10306600	Active TSS	Stomach Mucosa	stomach
16	chr12:10305800-10306800	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr12:10305800-10306800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
18	chr12:10305800-10306800	Active TSS	Brain Hippocampus Middle	brain
19	chr12:10305800-10306800	Active TSS	Fetal Kidney	kidney
20	chr12:10305800-10307000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr12:10305800-10307000	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr12:10305800-10307000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr12:10305800-10307000	Active TSS	Colon Smooth Muscle	Colon
24	chr12:10305800-10307000	Active TSS	Fetal Brain Female	brain
25	chr12:10305800-10307000	Active TSS	Right Ventricle	heart
26	chr12:10305800-10307000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr12:10305800-10307000	Active TSS	NH-A	brain
28	chr12:10306000-10306400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr12:10306000-10306400	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr12:10306000-10306400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr12:10306000-10306400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr12:10306000-10306400	Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr12:10306000-10306400	Active TSS	Primary monocytes fromperipheralblood	blood
34	chr12:10306000-10306400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
35	chr12:10306000-10306400	Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr12:10306000-10306400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr12:10306000-10306400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
38	chr12:10306000-10306400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr12:10306000-10306400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
40	chr12:10306000-10306400	Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr12:10306000-10306400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr12:10306000-10306400	Active TSS	Muscle Satellite Cultured Cells	--
43	chr12:10306000-10306400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr12:10306000-10306400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr12:10306000-10306400	Active TSS	Liver	Liver
46	chr12:10306000-10306400	Active TSS	Colonic Mucosa	Colon
47	chr12:10306000-10306400	Active TSS	Esophagus	oesophagus
48	chr12:10306000-10306400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
49	chr12:10306000-10306400	Active TSS	Fetal Stomach	stomach
50	chr12:10306000-10306400	Active TSS	Fetal Thymus	thymus

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