Variant report

Variant	rs10845051
Chromosome Location	chr12:10291446-10291447
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1050283	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs1050286	0.92[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs10505755	0.92[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs10845054	0.89[ASN][1000 genomes]
rs11053629	0.85[AFR][1000 genomes]
rs11053641	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11053647	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11053648	0.89[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes]
rs11053649	0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs11053650	0.83[AFR][1000 genomes]
rs11053654	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs11608874	0.88[AMR][1000 genomes]
rs11609310	0.88[AMR][1000 genomes]
rs11615002	0.88[AMR][1000 genomes]
rs11615035	0.88[AMR][1000 genomes]
rs11831267	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12230161	0.88[AMR][1000 genomes]
rs12231585	0.88[AMR][1000 genomes]
rs12819932	0.86[AMR][1000 genomes]
rs12822177	0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs13306593	0.86[AMR][1000 genomes]
rs17174597	0.86[AMR][1000 genomes]
rs17174598	0.86[AMR][1000 genomes]
rs2171602	0.88[AMR][1000 genomes]
rs34874375	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs34908088	0.81[AMR][1000 genomes]
rs35547206	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3736232	0.93[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs3736233	0.92[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs3736234	0.92[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs3736235	0.92[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs3816844	0.92[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs3994135	0.88[AMR][1000 genomes]
rs4495966	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4495967	0.87[AMR][1000 genomes]
rs4764299	0.81[CEU][hapmap]
rs6488265	0.82[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10285200-10292400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:10285800-10292200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr12:10285800-10292200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr12:10289600-10292400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:10290200-10292400	Weak transcription	Brain Angular Gyrus	brain
6	chr12:10291400-10292800	Enhancers	Primary neutrophils fromperipheralblood	blood

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