Variant report

Variant	rs11053834
Chromosome Location	chr12:7584327-7584328
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10845134	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12300843	0.97[AMR][1000 genomes]
rs12305920	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12306216	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12309292	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12309831	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12312491	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12316441	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4072796	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4072797	0.97[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4075106	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4131305	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58992912	0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59581534	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60514065	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61742598	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61748920	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7305170	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7485194	0.94[AMR][1000 genomes]
rs7485324	1.00[AMR][1000 genomes]
rs7487128	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7489145	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7965607	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7973752	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350216	chr12:7432676-7604018	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7527600-7591200	Weak transcription	Placenta	Placenta
2	chr12:7582600-7592200	Weak transcription	Adipose Nuclei	Adipose
3	chr12:7583600-7584600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr12:7583800-7584400	Weak transcription	HUVEC	blood vessel
5	chr12:7583800-7584800	Weak transcription	A549	lung
6	chr12:7583800-7585400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:7583800-7585600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:7583800-7587200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr12:7584200-7587000	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links