Variant report

Variant	rs7305170
Chromosome Location	chr12:7595836-7595837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:7591433..7594130-chr12:7595262..7598140,3	K562	blood:

Variant related genes	Relation type
ENSG00000255836	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10845134	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11053834	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12300843	0.97[AMR][1000 genomes]
rs12305920	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12306216	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12309292	0.82[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12309831	0.97[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12312491	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12316441	0.91[CHB][hapmap];0.97[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4072796	0.91[CHB][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4072797	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes]
rs4075106	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[AMR][1000 genomes]
rs4131305	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58992912	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59581534	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60514065	0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61742598	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61748920	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7485194	0.94[AMR][1000 genomes]
rs7485324	1.00[AMR][1000 genomes]
rs7487128	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes]
rs7489145	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[AMR][1000 genomes]
rs7965607	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7973752	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350216	chr12:7432676-7604018	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7593000-7596200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr12:7593000-7596800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr12:7593400-7596400	Weak transcription	HUVEC	blood vessel
4	chr12:7594800-7596600	Active TSS	Duodenum Mucosa	Duodenum
5	chr12:7595000-7596800	Active TSS	Adipose Nuclei	Adipose
6	chr12:7595200-7596400	Active TSS	Fetal Intestine Large	intestine
7	chr12:7595200-7596800	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr12:7595800-7596000	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr12:7595800-7596400	Active TSS	Placenta	Placenta

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