Variant report

Variant	rs11054898
Chromosome Location	chr12:12575171-12575172
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10459099	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505766	1.00[JPT][hapmap]
rs10743984	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10743987	1.00[CHB][hapmap]
rs10772558	1.00[ASN][1000 genomes]
rs10772561	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772564	0.81[AMR][1000 genomes]
rs10772565	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10845531	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845534	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10845535	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10845536	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845538	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10845549	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10845550	1.00[CHB][hapmap]
rs11054874	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11054879	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11054885	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11054895	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11054900	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11054902	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11054904	0.88[ASN][1000 genomes]
rs11054917	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11054918	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11531025	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11537452	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11559836	0.81[ASN][1000 genomes]
rs12301872	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2111270	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2417186	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs918115	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv1812889	chr12:12510842-12593406	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12537200-12576000	Weak transcription	Primary B cells from cord blood	blood
2	chr12:12558000-12586000	Weak transcription	Pancreas	Pancrea
3	chr12:12562400-12576200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:12565200-12585000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr12:12569000-12576800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr12:12572600-12588400	Weak transcription	Primary T cells from cord blood	blood
7	chr12:12573000-12577000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr12:12573000-12577600	Weak transcription	A549	lung

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