Variant report

Variant	rs11531025
Chromosome Location	chr12:12565459-12565460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10459099	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10743984	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10743986	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10772558	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772560	0.83[AMR][1000 genomes]
rs10772561	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772564	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10772565	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10845531	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845534	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10845535	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10845536	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845538	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11054879	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11054885	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11054895	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11054898	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11054900	0.88[ASN][1000 genomes]
rs11054902	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11054904	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11537452	1.00[ASN][1000 genomes]
rs11559836	0.81[ASN][1000 genomes]
rs12301872	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2417186	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv1812889	chr12:12510842-12593406	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12537200-12576000	Weak transcription	Primary B cells from cord blood	blood
2	chr12:12552000-12569000	Weak transcription	Hela-S3	cervix
3	chr12:12557200-12572400	Weak transcription	Primary T cells from cord blood	blood
4	chr12:12558000-12586000	Weak transcription	Pancreas	Pancrea
5	chr12:12562000-12565600	Weak transcription	GM12878-XiMat	blood
6	chr12:12562400-12576200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr12:12564800-12565600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:12564800-12565800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr12:12564800-12565800	Enhancers	HepG2	liver
10	chr12:12565000-12565800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:12565200-12585000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr12:12565400-12565800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:12565400-12568800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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