Variant report

Variant	rs11057471
Chromosome Location	chr12:124640519-124640520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10744165	1.00[ASN][1000 genomes]
rs11057521	1.00[ASN][1000 genomes]
rs12809315	1.00[ASN][1000 genomes]
rs12813142	1.00[ASN][1000 genomes]
rs12827974	1.00[ASN][1000 genomes]
rs12832596	1.00[ASN][1000 genomes]
rs35660813	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7136170	1.00[ASN][1000 genomes]
rs7300551	1.00[ASN][1000 genomes]
rs7302202	1.00[ASN][1000 genomes]
rs7311735	0.87[EUR][1000 genomes]
rs7312585	1.00[ASN][1000 genomes]
rs7315307	1.00[ASN][1000 genomes]
rs7961727	1.00[ASN][1000 genomes]
rs7962075	1.00[ASN][1000 genomes]
rs7971227	1.00[ASN][1000 genomes]
rs7975859	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv520633	chr12:124548394-124683205	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124632000-124641800	Weak transcription	Fetal Brain Female	brain
2	chr12:124632600-124643600	Weak transcription	Fetal Kidney	kidney
3	chr12:124635000-124642200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr12:124636800-124641800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:124638000-124641000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr12:124638800-124642000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:124638800-124654200	Weak transcription	Right Atrium	heart
8	chr12:124639200-124641800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:124639200-124641800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:124640200-124645400	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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