Variant report

Variant	rs35660813
Chromosome Location	chr12:124645923-124645924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10744165	1.00[ASN][1000 genomes]
rs11057471	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11057521	1.00[ASN][1000 genomes]
rs12809315	1.00[ASN][1000 genomes]
rs12813142	1.00[ASN][1000 genomes]
rs12827974	1.00[ASN][1000 genomes]
rs12832596	1.00[ASN][1000 genomes]
rs7136170	1.00[ASN][1000 genomes]
rs7300551	1.00[ASN][1000 genomes]
rs7302202	1.00[ASN][1000 genomes]
rs7311735	0.82[EUR][1000 genomes]
rs7312585	1.00[ASN][1000 genomes]
rs7315307	1.00[ASN][1000 genomes]
rs7961727	1.00[ASN][1000 genomes]
rs7962075	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7971227	1.00[ASN][1000 genomes]
rs7975859	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv520633	chr12:124548394-124683205	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124638800-124654200	Weak transcription	Right Atrium	heart
2	chr12:124642600-124651800	Weak transcription	Fetal Brain Female	brain
3	chr12:124643600-124647200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr12:124643600-124647200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr12:124643800-124646200	Enhancers	Ovary	ovary
6	chr12:124644600-124647000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr12:124644600-124648800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:124644800-124646600	Weak transcription	Stomach Mucosa	stomach
9	chr12:124644800-124647000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr12:124644800-124662200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr12:124645000-124647200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:124645200-124646200	Weak transcription	Fetal Kidney	kidney
13	chr12:124645200-124646800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:124645400-124647000	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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