Variant report

Variant	rs1105834
Chromosome Location	chr9:139971548-139971549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:56)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:56 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr9:139971285-139972675	GM12878	blood:	n/a	n/a
2	POLR2A	chr9:139971369-139971769	GM12892	blood:	n/a	n/a
3	POLR2A	chr9:139971490-139971755	HepG2	liver:	n/a	n/a
4	ZBTB7A	chr9:139971334-139972934	ECC-1	luminal epithelium:	n/a	n/a
5	POLR2A	chr9:139971436-139972342	GM18505	blood:	n/a	n/a
6	PML	chr9:139971138-139971658	GM12878	blood:	n/a	n/a
7	POLR2A	chr9:139971406-139972255	PFSK-1	brain:	n/a	n/a
8	POLR2A	chr9:139971281-139972626	GM15510	blood:	n/a	n/a
9	POLR2A	chr9:139971505-139972563	GM18526	blood:	n/a	n/a
10	POLR2A	chr9:139971415-139971818	HUVEC	blood vessel:	n/a	n/a
11	POLR2A	chr9:139971520-139971721	HCT-116	colon:	n/a	n/a
12	ZNF143	chr9:139971363-139972128	GM12878	blood:	n/a	n/a
13	ELF1	chr9:139971084-139971800	GM12878	blood:	n/a	n/a
14	TAF1	chr9:139971527-139972265	HepG2	liver:	n/a	n/a
15	POLR2A	chr9:139971480-139972184	GM19099	blood:	n/a	n/a
16	ZBTB7A	chr9:139971392-139972863	ECC-1	luminal epithelium:	n/a	n/a
17	POLR2A	chr9:139971537-139971789	GM12878	blood:	n/a	n/a
18	BHLHE40	chr9:139971307-139972703	GM12878	blood:	n/a	n/a
19	POLR2A	chr9:139971472-139971782	GM12878	blood:	n/a	n/a
20	CHD2	chr9:139971373-139972109	GM12878	blood:	n/a	chr9:139971558-139971568 chr9:139971553-139971563
21	POLR2A	chr9:139971333-139972107	U87	brain:	n/a	n/a
22	SIN3A	chr9:139971476-139971676	GM12878	blood:	n/a	n/a
23	POLR2A	chr9:139971448-139972586	GM12892	blood:	n/a	n/a
24	TBL1XR1	chr9:139971349-139971697	GM12878	blood:	n/a	n/a
25	EBF1	chr9:139971251-139971673	GM12878	blood:	n/a	chr9:139971465-139971476
26	POLR2A	chr9:139971366-139972645	HUVEC	blood vessel:	n/a	n/a
27	MXI1	chr9:139971144-139972434	IMR90	lung:	n/a	n/a
28	YY1	chr9:139971317-139971819	GM12878	blood:	n/a	chr9:139971741-139971752
29	POLR2A	chr9:139971501-139971776	U87	brain:	n/a	n/a
30	POLR2A	chr9:139971452-139971800	GM12892	blood:	n/a	n/a
31	POLR2A	chr9:139971521-139972145	NB4	blood:	n/a	n/a
32	MXI1	chr9:139971118-139972854	SK-N-SH	brain:	n/a	n/a
33	MAZ	chr9:139971342-139972846	IMR90	lung:	n/a	n/a
34	CREB1	chr9:139971186-139972500	HepG2	liver:	n/a	n/a
35	POLR2A	chr9:139971441-139971800	GM12878	blood:	n/a	n/a
36	POLR2A	chr9:139971312-139972145	GM12878	blood:	n/a	n/a
37	EBF1	chr9:139971301-139972075	GM12878	blood:	n/a	chr9:139971465-139971476
38	POLR2A	chr9:139971339-139972101	U87	brain:	n/a	n/a
39	STAT1	chr9:139971317-139971677	GM12878	blood:	n/a	chr9:139971479-139971487
40	ZBTB7A	chr9:139971418-139971551	HepG2	liver:	n/a	n/a
41	CEBPD	chr9:139971465-139971803	HepG2	liver:	n/a	n/a
42	POLR2A	chr9:139971490-139972553	GM18951	blood:	n/a	n/a
43	POLR2A	chr9:139971414-139971844	HUVEC	blood vessel:	n/a	n/a
44	POLR2A	chr9:139971308-139971793	HUVEC	blood vessel:	n/a	n/a
45	ELK1	chr9:139971519-139971692	GM12878	blood:	n/a	n/a
46	MAX	chr9:139971439-139972214	GM12878	blood:	n/a	n/a
47	POLR2A	chr9:139971506-139972187	Raji	blood:	n/a	n/a
48	MAZ	chr9:139971345-139972670	GM12878	blood:	n/a	n/a
49	GABPA	chr9:139971496-139971804	K562	blood:	n/a	n/a
50	POLR2A	chr9:139971306-139972341	HUVEC	blood vessel:	n/a	n/a

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:139939213..139941971-chr9:139970732..139973037,3	MCF-7	breast:
2	chr9:139947182..139950009-chr9:139970267..139973726,4	MCF-7	breast:
3	chr9:139890178..139892429-chr9:139970616..139974242,3	MCF-7	breast:
4	chr9:139971489..139973394-chr9:140133950..140136079,2	MCF-7	breast:
5	chr9:139970477..139972267-chr9:140077110..140080009,2	MCF-7	breast:
6	chr9:139970650..139972783-chr9:139997562..140000175,2	MCF-7	breast:
7	chr9:139946459..139950309-chr9:139970278..139975130,5	MCF-7	breast:
8	chr9:139971143..139973305-chr9:140008709..140011009,2	MCF-7	breast:
9	chr9:139969526..139971651-chr9:140117865..140119666,2	MCF-7	breast:
10	chr9:139936954..139940936-chr9:139970173..139973969,5	MCF-7	breast:
11	chr9:139970202..139971780-chr9:140024057..140026057,2	MCF-7	breast:
12	chr9:139968290..139973435-chr9:140007301..140011386,5	K562	blood:
13	chr9:139970719..139973561-chr9:140098627..140100576,2	MCF-7	breast:
14	chr9:139971230..139973378-chr9:140000775..140003092,2	MCF-7	breast:

No data

Variant related genes	Relation type
UAP1L1	TF binding region
ENSG00000054179	Chromatin interaction
ENSG00000187713	Chromatin interaction
ENSG00000197191	Chromatin interaction
ENSG00000176978	Chromatin interaction
ENSG00000176248	Chromatin interaction
ENSG00000188566	Chromatin interaction
ENSG00000176058	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000107281	Chromatin interaction
ENSG00000236394	Chromatin interaction
ENSG00000169583	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10870176	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10870177	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11145995	0.81[EUR][1000 genomes]
rs11790092	0.81[EUR][1000 genomes]
rs11794029	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12000517	0.81[EUR][1000 genomes]
rs12115325	0.81[EUR][1000 genomes]
rs12375806	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3750519	0.86[ASN][1000 genomes]
rs41307440	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4880088	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4880090	0.81[EUR][1000 genomes]
rs4880201	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4880202	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:92 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
2	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
3	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
4	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
5	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
6	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
7	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
8	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
9	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
10	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
11	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
12	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
13	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
14	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
15	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
16	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
17	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
18	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
19	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
20	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
21	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
22	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
23	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
24	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
25	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
26	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
27	esv1823828	chr9:139820363-140023694	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
28	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
29	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
30	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
31	nsv894503	chr9:139830940-139987350	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
32	esv1834381	chr9:139834195-140031290	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	125 gene(s)	inside rSNPs	diseases
33	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
34	nsv894506	chr9:139841512-140143801	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	278 gene(s)	inside rSNPs	diseases
35	nsv894507	chr9:139860264-139995065	Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
36	nsv894517	chr9:139860631-139977351	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
37	nsv894516	chr9:139860631-139979276	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
38	nsv894518	chr9:139860631-139995065	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
39	nsv466690	chr9:139860631-140042320	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
40	nsv615989	chr9:139860631-140042320	Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
41	nsv615990	chr9:139860631-140068342	Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	118 gene(s)	inside rSNPs	diseases
42	nsv894519	chr9:139860631-140123584	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
43	nsv894520	chr9:139860631-140135118	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	185 gene(s)	inside rSNPs	diseases
44	nsv894521	chr9:139860631-140228092	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
45	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
46	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
47	nsv1053902	chr9:139876167-139991102	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
48	nsv894547	chr9:139877698-139982868	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
49	nsv894549	chr9:139879170-139995065	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
50	nsv894550	chr9:139879170-140039240	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	115 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1105834	UAP1L1	cis	Whole Blood	GTEx
rs1105834	MAN1B1	cis	Whole Blood	GTEx
rs1105834	RP11-229P13.22	cis	Whole Blood	GTEx
rs1105834	RP11-229P13.23	cis	Whole Blood	GTEx
rs1105834	SAPCD2	cis	Whole Blood	GTEx
rs1105834	UAP1L1	cis	Artery Tibial	GTEx

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139965000-139971800	Weak transcription	Small Intestine	intestine
2	chr9:139970200-139972000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:139971000-139971600	Flanking Active TSS	HepG2	liver
4	chr9:139971000-139972000	Enhancers	Primary B cells from cord blood	blood
5	chr9:139971000-139973000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:139971200-139971600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
7	chr9:139971200-139971600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
8	chr9:139971200-139971600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
9	chr9:139971200-139971600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:139971200-139971600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr9:139971200-139971600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
12	chr9:139971200-139971600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:139971200-139971600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:139971200-139971600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:139971200-139971600	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr9:139971200-139971600	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr9:139971200-139971600	Flanking Active TSS	Brain Hippocampus Middle	brain
18	chr9:139971200-139971600	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr9:139971200-139971600	Enhancers	Fetal Heart	heart
20	chr9:139971200-139971600	Bivalent Enhancer	Fetal Lung	lung
21	chr9:139971200-139971600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
22	chr9:139971200-139971600	Flanking Active TSS	Right Atrium	heart
23	chr9:139971200-139971600	Flanking Active TSS	GM12878-XiMat	blood
24	chr9:139971200-139971600	Flanking Active TSS	HSMM	muscle
25	chr9:139971200-139971600	Flanking Active TSS	HSMMtube	muscle
26	chr9:139971200-139971600	Flanking Active TSS	NH-A	brain
27	chr9:139971200-139971600	Flanking Active TSS	Osteobl	bone
28	chr9:139971200-139971800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:139971200-139971800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:139971200-139971800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr9:139971200-139971800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr9:139971200-139971800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
33	chr9:139971200-139971800	Flanking Active TSS	Lung	lung
34	chr9:139971200-139971800	Flanking Active TSS	Pancreas	Pancrea
35	chr9:139971200-139971800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr9:139971200-139971800	Flanking Active TSS	Hela-S3	cervix
37	chr9:139971200-139971800	Enhancers	K562	blood
38	chr9:139971200-139971800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr9:139971200-139971800	Enhancers	NHDF-Ad	bronchial
40	chr9:139971200-139972200	Bivalent Enhancer	Fetal Thymus	thymus
41	chr9:139971200-139972400	Active TSS	H9 Cell Line	embryonic stem cell
42	chr9:139971200-139972400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr9:139971200-139972400	Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr9:139971200-139972400	Enhancers	Stomach Mucosa	stomach
45	chr9:139971200-139972800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr9:139971200-139972800	Active TSS	Left Ventricle	heart
47	chr9:139971200-139973000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
48	chr9:139971200-139973200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr9:139971200-139973600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
50	chr9:139971200-139974000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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