Variant report

Variant	rs3750519
Chromosome Location	chr9:139981230-139981231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr9:139980914-139981614	PFSK-1	brain:	n/a	chr9:139981146-139981156
2	TEAD4	chr9:139980972-139981700	K562	blood:	n/a	n/a
3	TCF12	chr9:139980748-139981825	ECC-1	luminal epithelium:	n/a	chr9:139981246-139981253
4	POLR2A	chr9:139978872-139982281	SK-N-MC	brain:	n/a	n/a
5	POLR2A	chr9:139980816-139981701	GM12891	blood:	n/a	n/a
6	FOS	chr9:139980985-139981481	MCF10A-Er-Src	breast:	n/a	n/a
7	REST	chr9:139980798-139981656	A549	lung:	n/a	chr9:139981146-139981156
8	MAFK	chr9:139980956-139981567	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr9:139979760-139981840	Hela-S3	cervix:	n/a	n/a
10	BCL3	chr9:139980878-139981679	A549	lung:	n/a	chr9:139980992-139981005 chr9:139981253-139981266
11	YY1	chr9:139980337-139982032	SK-N-SH	brain:	n/a	chr9:139981830-139981841 chr9:139981707-139981721 chr9:139981774-139981788 chr9:139980582-139980590 chr9:139981712-139981721 chr9:139981701-139981712
12	TCF12	chr9:139980845-139981582	GM12878	blood:	n/a	chr9:139981246-139981253
13	ZNF384	chr9:139979490-139981425	K562	blood:	n/a	n/a
14	USF1	chr9:139981038-139981490	GM12878	blood:	n/a	n/a
15	POLR2A	chr9:139980165-139982135	GM18505	blood:	n/a	n/a
16	NFATC1	chr9:139980815-139981509	GM12878	blood:	n/a	n/a
17	POLR2A	chr9:139980186-139981677	Hela-S3	cervix:	n/a	n/a
18	HEY1	chr9:139980829-139981594	HepG2	liver:	n/a	chr9:139980832-139980847
19	YY1	chr9:139980323-139981725	GM12892	blood:	n/a	chr9:139981707-139981721 chr9:139980582-139980590 chr9:139981712-139981721 chr9:139981701-139981712
20	POLR2A	chr9:139980834-139981727	K562	blood:	n/a	n/a
21	SIN3AK20	chr9:139981027-139981294	SK-N-SH	brain:	n/a	n/a
22	RUNX3	chr9:139980874-139981667	GM12878	blood:	n/a	n/a
23	TCF12	chr9:139980853-139981634	ECC-1	luminal epithelium:	n/a	chr9:139981246-139981253
24	USF2	chr9:139980772-139981429	H1-hESC	embryonic stem cell:	n/a	chr9:139981166-139981177
25	USF1	chr9:139980904-139981557	ECC-1	luminal epithelium:	n/a	n/a
26	JUN	chr9:139979589-139982534	K562	blood:	n/a	chr9:139982490-139982502
27	POLR2A	chr9:139980306-139982154	GM18951	blood:	n/a	n/a
28	TCF3	chr9:139980640-139981695	GM12878	blood:	n/a	n/a
29	YY1	chr9:139980767-139981825	H1-hESC	embryonic stem cell:	n/a	chr9:139981707-139981721 chr9:139981774-139981788 chr9:139981712-139981721 chr9:139981701-139981712
30	TAF1	chr9:139981213-139981630	GM12892	blood:	n/a	n/a
31	YY1	chr9:139980417-139981692	K562	blood:	n/a	chr9:139980582-139980590
32	YY1	chr9:139980840-139981768	SK-N-SH	brain:	n/a	chr9:139981707-139981721 chr9:139981712-139981721 chr9:139981701-139981712
33	YY1	chr9:139980444-139981691	GM12878	blood:	n/a	chr9:139980582-139980590
34	SP4	chr9:139980946-139981597	H1-hESC	embryonic stem cell:	n/a	n/a
35	ZNF143	chr9:139980996-139981747	GM12878	blood:	n/a	n/a
36	POLR2A	chr9:139979479-139981905	PFSK-1	brain:	n/a	n/a
37	REST	chr9:139980825-139981718	A549	lung:	n/a	chr9:139981146-139981156
38	NRF1	chr9:139981070-139981590	H1-hESC	embryonic stem cell:	n/a	chr9:139981398-139981409 chr9:139981267-139981278 chr9:139981395-139981409 chr9:139981269-139981278 chr9:139981398-139981412 chr9:139981267-139981278 chr9:139981368-139981382 chr9:139981267-139981281
39	THAP1	chr9:139981145-139981643	K562	blood:	n/a	n/a
40	ARID3A	chr9:139981101-139981526	K562	blood:	n/a	n/a
41	FOXA1	chr9:139981144-139981754	HepG2	liver:	n/a	n/a
42	USF1	chr9:139980933-139981446	A549	lung:	n/a	n/a
43	SP1	chr9:139980965-139981682	GM12878	blood:	n/a	chr9:139981192-139981201 chr9:139981212-139981224 chr9:139981212-139981224 chr9:139981095-139981105 chr9:139981192-139981202 chr9:139981192-139981202 chr9:139981213-139981222
44	TBL1XR1	chr9:139980975-139981731	GM12878	blood:	n/a	n/a
45	TAF1	chr9:139980876-139981602	Hela-S3	cervix:	n/a	n/a
46	SPI1	chr9:139981054-139981852	GM12878	blood:	n/a	n/a
47	POLR2A	chr9:139980420-139981749	K562	blood:	n/a	n/a
48	YY1	chr9:139980809-139981636	A549	lung:	n/a	n/a
49	MAX	chr9:139980139-139981858	ECC-1	luminal epithelium:	n/a	chr9:139980381-139980390 chr9:139980380-139980391 chr9:139980382-139980389 chr9:139980889-139980898 chr9:139980381-139980391 chr9:139980380-139980390 chr9:139981167-139981177 chr9:139981167-139981176 chr9:139980381-139980390 chr9:139981167-139981178 chr9:139980380-139980391 chr9:139981166-139981176 chr9:139981167-139981178 chr9:139981167-139981178 chr9:139981168-139981177 chr9:139980380-139980391
50	TAF1	chr9:139980509-139981867	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:11491388..11492232-chr9:139980848..139981541,2	Hela-S3	cervix:
2	chr9:139978186..139981401-chr9:140080781..140084573,5	MCF-7	breast:
3	chr9:139980527..139982510-chr9:140005134..140007646,3	MCF-7	breast:
4	chr9:139945837..139948637-chr9:139981216..139983657,2	MCF-7	breast:
5	chr9:139979812..139982069-chr9:140089505..140091376,2	MCF-7	breast:
6	chr9:139979953..139982943-chr9:140148300..140149854,2	MCF-7	breast:
7	chr7:134671206..134671804-chr9:139981057..139981937,2	Hela-S3	cervix:
8	chr9:139959442..139968160-chr9:139974620..139981984,14	K562	blood:
9	chr11:71639162..71640098-chr9:139980826..139981643,2	Hela-S3	cervix:
10	chr9:139981176..139982959-chr9:140195410..140197126,2	MCF-7	breast:
11	chr9:139889162..139891351-chr9:139979563..139981376,2	MCF-7	breast:
12	chr9:139920279..139925059-chr9:139978182..139982194,5	MCF-7	breast:
13	chr9:139980450..139982853-chr9:140097907..140099680,2	MCF-7	breast:
14	chr9:139980141..139982079-chr9:140093355..140095855,3	MCF-7	breast:
15	chr9:139981197..139983699-chr9:140062356..140065560,4	MCF-7	breast:
16	chr9:139980519..139982982-chr9:140001282..140004740,5	MCF-7	breast:
17	chr9:139622060..139624419-chr9:139980313..139982424,2	K562	blood:
18	chr9:139621146..139622893-chr9:139980116..139982904,2	K562	blood:
19	chr7:95064054..95064554-chr9:139980904..139981835,2	Hela-S3	cervix:
20	chr9:139702465..139705177-chr9:139980663..139982793,2	MCF-7	breast:
21	chr9:139981137..139983092-chr9:140148419..140149935,2	K562	blood:
22	chr9:139980430..139982105-chr9:140507982..140509636,2	MCF-7	breast:
23	chr9:139979340..139983315-chr9:140006242..140009946,7	K562	blood:
24	chr9:139979578..139982108-chr9:140060574..140063297,2	MCF-7	breast:
25	chr9:139964472..139965299-chr9:139980224..139981540,3	Hela-S3	cervix:
26	chr9:139978705..139985965-chr9:140004535..140011196,17	MCF-7	breast:
27	chr9:139935230..139939523-chr9:139979117..139982654,3	K562	blood:
28	chr9:139938587..139945189-chr9:139976684..139982680,14	MCF-7	breast:
29	chr9:139979217..139982968-chr9:140130784..140138120,12	K562	blood:
30	chr9:139979148..139982071-chr9:140050756..140053105,2	MCF-7	breast:
31	chr9:139945464..139950452-chr9:139979490..139982063,5	MCF-7	breast:
32	chr9:139976678..139982959-chr9:140133062..140138076,10	K562	blood:
33	chr9:139981209..139983184-chr9:140092979..140095228,2	K562	blood:
34	chr9:139980094..139982437-chr9:139998327..140000018,2	K562	blood:
35	chr9:139979223..139981323-chr9:140116227..140119584,4	K562	blood:
36	chr9:139979838..139983602-chr9:140093093..140096607,4	MCF-7	breast:
37	chr9:139978974..139982558-chr9:140133335..140136372,4	MCF-7	breast:
38	chr9:139887009..139891306-chr9:139978318..139981819,5	MCF-7	breast:
39	chr9:139973218..139984066-chr9:140109898..140123246,33	MCF-7	breast:
40	chr9:139979763..139981414-chr9:140352463..140355092,2	K562	blood:
41	chr9:139980364..139982895-chr9:139994247..139997244,3	MCF-7	breast:
42	chr8:146011251..146013601-chr9:139979216..139981658,2	K562	blood:
43	chr9:139979404..139984708-chr9:140006242..140011845,8	K562	blood:
44	chr9:139979737..139981781-chr9:140123647..140125590,2	MCF-7	breast:
45	chr9:139938222..139943243-chr9:139978995..139981803,4	MCF-7	breast:
46	chr1:149899173..149900038-chr9:139981131..139981882,2	HCT-116	colon:
47	chr9:139980253..139981853-chr9:140069761..140072749,2	MCF-7	breast:
48	chr9:139978814..139983525-chr9:140133677..140136701,7	MCF-7	breast:
49	chr9:139929376..139932229-chr9:139980723..139983285,2	MCF-7	breast:

Variant related genes	Relation type
MAN1B1	TF binding region
ENSG00000268996	TF binding region
ENSG00000186193	Chromatin interaction
ENSG00000228544	Chromatin interaction
ENSG00000107281	Chromatin interaction
ENSG00000176248	Chromatin interaction
ENSG00000165802	Chromatin interaction
ENSG00000184709	Chromatin interaction
ENSG00000176101	Chromatin interaction
ENSG00000212864	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000236394	Chromatin interaction
ENSG00000198435	Chromatin interaction
ENSG00000197191	Chromatin interaction
ENSG00000263697	Chromatin interaction
ENSG00000233198	Chromatin interaction
ENSG00000105854	Chromatin interaction
ENSG00000198569	Chromatin interaction
ENSG00000137522	Chromatin interaction
ENSG00000188986	Chromatin interaction
ENSG00000169583	Chromatin interaction
ENSG00000180539	Chromatin interaction
ENSG00000235117	Chromatin interaction
ENSG00000176978	Chromatin interaction
ENSG00000054179	Chromatin interaction
ENSG00000197070	Chromatin interaction
ENSG00000148362	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000146856	Chromatin interaction
ENSG00000176058	Chromatin interaction
ENSG00000176884	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000187266	Chromatin interaction
ENSG00000143368	Chromatin interaction
ENSG00000196378	Chromatin interaction
ENSG00000254469	Chromatin interaction
ENSG00000107331	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10870176	0.93[ASN][1000 genomes]
rs10870177	0.93[ASN][1000 genomes]
rs1105834	0.86[ASN][1000 genomes]
rs11794029	0.86[ASN][1000 genomes]
rs41307440	0.93[ASN][1000 genomes]
rs4880088	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:80 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
2	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
3	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
4	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
5	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
6	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
7	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
8	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
9	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
10	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
11	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
12	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
13	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
14	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
15	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
16	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
17	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
18	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
19	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
20	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
21	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
22	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
23	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
24	esv1823828	chr9:139820363-140023694	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
25	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
26	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
27	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
28	nsv894503	chr9:139830940-139987350	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
29	esv1834381	chr9:139834195-140031290	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	125 gene(s)	inside rSNPs	diseases
30	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
31	nsv894506	chr9:139841512-140143801	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	278 gene(s)	inside rSNPs	diseases
32	nsv894507	chr9:139860264-139995065	Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
33	nsv894518	chr9:139860631-139995065	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
34	nsv466690	chr9:139860631-140042320	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
35	nsv615989	chr9:139860631-140042320	Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
36	nsv615990	chr9:139860631-140068342	Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	118 gene(s)	inside rSNPs	diseases
37	nsv894519	chr9:139860631-140123584	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
38	nsv894520	chr9:139860631-140135118	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	185 gene(s)	inside rSNPs	diseases
39	nsv894521	chr9:139860631-140228092	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
40	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
41	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
42	nsv1053902	chr9:139876167-139991102	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
43	nsv894547	chr9:139877698-139982868	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
44	nsv894549	chr9:139879170-139995065	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
45	nsv894550	chr9:139879170-140039240	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	115 gene(s)	inside rSNPs	diseases
46	nsv894551	chr9:139879170-140118448	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	152 gene(s)	inside rSNPs	diseases
47	nsv894552	chr9:139879170-140135118	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	183 gene(s)	inside rSNPs	diseases
48	nsv894553	chr9:139879170-140318758	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
49	nsv894554	chr9:139879170-140339091	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
50	nsv894556	chr9:139904037-140408904	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139980200-139981400	Flanking Active TSS	Placenta	Placenta
2	chr9:139980200-139981800	Active TSS	Fetal Brain Female	brain
3	chr9:139980200-139982000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:139980200-139982000	Active TSS	Brain Anterior Caudate	brain
5	chr9:139980200-139982000	Enhancers	Fetal Brain Male	brain
6	chr9:139980200-139982200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:139980200-139982400	Active TSS	H9 Cell Line	embryonic stem cell
8	chr9:139980400-139982000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:139980400-139982000	Active TSS	Right Atrium	heart
10	chr9:139980400-139982000	Active TSS	HepG2	liver
11	chr9:139980400-139982000	Active TSS	HSMM	muscle
12	chr9:139980400-139982200	Active TSS	Aorta	Aorta
13	chr9:139980400-139982200	Active TSS	Fetal Kidney	kidney
14	chr9:139980400-139982200	Active TSS	A549	lung
15	chr9:139980400-139982400	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr9:139980400-139982400	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr9:139980400-139982800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:139980600-139981800	Active TSS	Primary monocytes fromperipheralblood	blood
19	chr9:139980600-139981800	Active TSS	Primary B cells from peripheral blood	blood
20	chr9:139980600-139981800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
21	chr9:139980600-139981800	Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr9:139980600-139981800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr9:139980600-139981800	Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr9:139980600-139981800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:139980600-139981800	Active TSS	Brain Angular Gyrus	brain
26	chr9:139980600-139981800	Active TSS	Brain Cingulate Gyrus	brain
27	chr9:139980600-139981800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr9:139980600-139981800	Active TSS	HUVEC	blood vessel
29	chr9:139980600-139982000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr9:139980600-139982000	Active TSS	H1 Cell Line	embryonic stem cell
31	chr9:139980600-139982000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:139980600-139982000	Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr9:139980600-139982000	Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr9:139980600-139982000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:139980600-139982000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:139980600-139982000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:139980600-139982000	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr9:139980600-139982000	Active TSS	Brain Hippocampus Middle	brain
39	chr9:139980600-139982000	Active TSS	Brain Substantia Nigra	brain
40	chr9:139980600-139982000	Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr9:139980600-139982000	Active TSS	Esophagus	oesophagus
42	chr9:139980600-139982000	Active TSS	Fetal Intestine Small	intestine
43	chr9:139980600-139982000	Active TSS	Fetal Lung	lung
44	chr9:139980600-139982000	Active TSS	Gastric	stomach
45	chr9:139980600-139982000	Active TSS	Left Ventricle	heart
46	chr9:139980600-139982000	Active TSS	Sigmoid Colon	Sigmoid Colon
47	chr9:139980600-139982000	Active TSS	Small Intestine	intestine
48	chr9:139980600-139982000	Active TSS	HSMMtube	muscle
49	chr9:139980600-139982000	Active TSS	K562	blood
50	chr9:139980600-139982000	Active TSS	NHLF	lung

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