Variant report

Variant	rs11059711
Chromosome Location	chr12:123233892-123233893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:123212708..123217136-chr12:123232023..123237517,8	MCF-7	breast:
2	chr12:123213766..123215849-chr12:123233024..123235349,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196917	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10466883	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10466884	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11059724	0.94[ASN][1000 genomes]
rs11059834	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11059932	0.92[ASN][1000 genomes]
rs11059953	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11059954	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11060064	0.81[CHB][hapmap]
rs11060065	0.81[CHB][hapmap]
rs12298293	0.82[ASN][1000 genomes]
rs12302287	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12303150	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12303270	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12303328	1.00[YRI][hapmap]
rs12303951	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12305822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12307038	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12310386	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12310901	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12312837	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12313538	0.82[ASN][1000 genomes]
rs12313600	0.82[ASN][1000 genomes]
rs12314544	0.80[CHB][hapmap]
rs12314976	1.00[CEU][hapmap]
rs12315520	0.82[ASN][1000 genomes]
rs12316263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12318871	0.82[ASN][1000 genomes]
rs12319160	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12321100	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12321556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1260120	0.92[ASN][1000 genomes]
rs1671679	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1671688	0.92[ASN][1000 genomes]
rs1696320	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1696326	0.92[GIH][hapmap]
rs1799618	0.92[GIH][hapmap]
rs2253504	0.92[ASN][1000 genomes]
rs2649902	0.94[ASN][1000 genomes]
rs2936730	0.90[ASN][1000 genomes]
rs3817095	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4759393	0.86[CHB][hapmap]
rs57366988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60469279	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61176973	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6489240	0.91[ASN][1000 genomes]
rs652533	0.93[ASN][1000 genomes]
rs701484	0.89[ASN][1000 genomes]
rs7138436	0.92[ASN][1000 genomes]
rs7294991	0.82[CHB][hapmap]
rs7309225	0.82[CHB][hapmap]
rs7311386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7486414	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7966971	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs839360	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs839363	0.91[ASN][1000 genomes]
rs9645762	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899571	chr12:123215734-123363562	Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123228800-123236800	Weak transcription	Right Atrium	heart
2	chr12:123229200-123234200	Weak transcription	HepG2	liver
3	chr12:123229200-123236000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr12:123232000-123234200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:123232400-123235200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr12:123232400-123235400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:123232400-123236400	Weak transcription	Esophagus	oesophagus
8	chr12:123232600-123235400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:123232600-123236600	Weak transcription	HMEC	breast
10	chr12:123232800-123235400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:123232800-123236600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr12:123233200-123235400	Weak transcription	Primary B cells from cord blood	blood
13	chr12:123233200-123235400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr12:123233200-123235800	Weak transcription	NHEK	skin
15	chr12:123233200-123236600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr12:123233400-123234400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:123233800-123234000	Enhancers	A549	lung
18	chr12:123233800-123236800	Weak transcription	Primary monocytes fromperipheralblood	blood

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