Variant report

Variant	rs12319160
Chromosome Location	chr12:123275773-123275774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10466883	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10466884	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11059711	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11059724	0.89[ASN][1000 genomes]
rs11059834	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11059932	0.90[ASN][1000 genomes]
rs11059953	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11059954	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12298293	0.82[ASN][1000 genomes]
rs12302287	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12303150	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12303270	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12303951	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12305822	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12307038	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12310386	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12310901	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12312837	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12313538	0.82[ASN][1000 genomes]
rs12313600	0.82[ASN][1000 genomes]
rs12315520	0.82[ASN][1000 genomes]
rs12316263	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12318871	0.82[ASN][1000 genomes]
rs12319654	0.80[AFR][1000 genomes]
rs12321100	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12321556	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1260120	0.91[ASN][1000 genomes]
rs1671679	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1671688	0.91[ASN][1000 genomes]
rs1696320	0.92[ASN][1000 genomes]
rs2253504	0.88[ASN][1000 genomes]
rs2292131	0.80[AFR][1000 genomes]
rs2649902	0.89[ASN][1000 genomes]
rs2936730	0.92[ASN][1000 genomes]
rs3817095	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57366988	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58182048	0.80[AFR][1000 genomes]
rs60469279	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61176973	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6489240	0.92[ASN][1000 genomes]
rs652533	0.88[ASN][1000 genomes]
rs701484	0.87[ASN][1000 genomes]
rs7138436	0.87[ASN][1000 genomes]
rs7311386	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7486414	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7966971	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs839363	0.92[ASN][1000 genomes]
rs9645762	0.88[ASN][1000 genomes]
rs9788290	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899571	chr12:123215734-123363562	Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123259400-123310600	Weak transcription	HSMMtube	muscle
2	chr12:123259800-123285800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr12:123259800-123310600	Weak transcription	Brain Substantia Nigra	brain
4	chr12:123260000-123278400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr12:123260000-123278400	Weak transcription	Brain Angular Gyrus	brain
6	chr12:123260000-123278400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr12:123260000-123278400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr12:123260000-123303600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr12:123260200-123278000	Weak transcription	Fetal Thymus	thymus
10	chr12:123260200-123284000	Weak transcription	Primary B cells from cord blood	blood
11	chr12:123260200-123284000	Weak transcription	Primary T cells from cord blood	blood
12	chr12:123264200-123278400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:123264200-123290800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr12:123264600-123278400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr12:123265600-123303600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr12:123266000-123303800	Weak transcription	Brain Hippocampus Middle	brain
17	chr12:123272800-123275800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr12:123273800-123280200	Weak transcription	Stomach Mucosa	stomach
19	chr12:123274400-123278400	Weak transcription	K562	blood
20	chr12:123274600-123276600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr12:123274600-123288800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr12:123275000-123276000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr12:123275000-123276400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr12:123275000-123276600	Enhancers	HMEC	breast
25	chr12:123275200-123276600	Enhancers	NHEK	skin
26	chr12:123275400-123275800	Weak transcription	NH-A	brain
27	chr12:123275600-123277600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr12:123275600-123278400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr12:123275600-123278400	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links