Variant report

Variant	rs11063105
Chromosome Location	chr12:4469387-4469388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11063110	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11063112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11063118	0.81[CHB][hapmap]
rs11063123	0.90[ASN][1000 genomes]
rs11063127	0.88[ASN][1000 genomes]
rs11063129	0.88[ASN][1000 genomes]
rs11063130	0.88[ASN][1000 genomes]
rs12230757	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12231368	0.82[AFR][1000 genomes]
rs12819556	0.81[EUR][1000 genomes]
rs12819956	0.82[EUR][1000 genomes]
rs12823289	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12823931	0.93[CHB][hapmap]
rs13312789	0.93[CHB][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs16931344	0.88[ASN][1000 genomes]
rs17773299	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs2358955	0.86[ASN][1000 genomes]
rs3812822	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs6489538	0.88[ASN][1000 genomes]
rs7133330	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7316649	0.93[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7955866	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7961824	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7966472	0.81[ASN][1000 genomes]
rs7967051	0.86[ASN][1000 genomes]
rs7976548	0.85[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs7978281	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv468985	chr12:4423612-4473329	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv557122	chr12:4423612-4473329	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	nsv557123	chr12:4436632-4736569	Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv519278	chr12:4441906-4475194	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv528492	chr12:4462161-4473329	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4465200-4488400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:4465400-4474400	Weak transcription	Right Atrium	heart
3	chr12:4465400-4475200	Weak transcription	Gastric	stomach

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