Variant report

Variant	rs11063112
Chromosome Location	chr12:4478080-4478081
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	FGF23	hsa-miR-26b-5p	chr12:4478071-4478090

Variant related genes	Relation type
FGF23	miRNA target site

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11063081	0.85[GIH][hapmap];0.81[MKK][hapmap]
rs11063105	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11063110	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11063118	0.82[CHB][hapmap]
rs11063123	0.88[ASN][1000 genomes]
rs11063127	0.86[ASN][1000 genomes]
rs11063129	0.86[ASN][1000 genomes]
rs11063130	0.86[ASN][1000 genomes]
rs12230757	0.88[CEU][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12819556	0.81[EUR][1000 genomes]
rs12819956	0.82[EUR][1000 genomes]
rs12823289	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12823931	0.94[CHB][hapmap];0.89[CHD][hapmap];0.95[LWK][hapmap]
rs13312789	0.93[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];0.84[YRI][hapmap];0.94[ASN][1000 genomes]
rs16931344	0.86[ASN][1000 genomes]
rs17773299	0.94[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2358955	0.84[ASN][1000 genomes]
rs3812822	0.94[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs6489538	0.86[ASN][1000 genomes]
rs7133330	0.85[GIH][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap];0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7316649	0.94[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs7955866	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7961824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7967051	0.84[ASN][1000 genomes]
rs7976548	0.86[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs7978281	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv557123	chr12:4436632-4736569	Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11063112	NRN1	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4465200-4488400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:4473800-4478600	Weak transcription	Fetal Intestine Large	intestine
3	chr12:4477600-4479400	Weak transcription	Fetal Intestine Small	intestine

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