Variant report

Variant	rs11063326
Chromosome Location	chr12:4852662-4852663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10492056	0.82[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs12369972	0.92[EUR][1000 genomes]
rs12423097	0.82[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap]
rs17176851	0.82[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs17783505	0.82[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap]
rs766506	0.88[CEU][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832318	chr12:4655799-4875837	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1054218	chr12:4819576-4882667	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11063326	WNK1	cis	parietal	SCAN
rs11063326	NANOGNB	cis	cerebellum	SCAN
rs11063326	PTMS	cis	parietal	SCAN
rs11063326	ING4	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4834000-4870200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:4836400-4872400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:4837200-4853800	Weak transcription	Brain Germinal Matrix	brain
4	chr12:4845000-4853800	Weak transcription	Fetal Brain Male	brain
5	chr12:4845000-4872600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:4847000-4855200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:4848600-4854600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:4850200-4856800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr12:4850200-4861200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr12:4851400-4853600	Weak transcription	Fetal Brain Female	brain
11	chr12:4852400-4872400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links