Variant report

Variant	rs17783505
Chromosome Location	chr12:4853898-4853899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10492056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10492057	1.00[ASW][hapmap];0.81[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs11063326	0.82[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap]
rs12423097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16928032	1.00[YRI][hapmap]
rs16931672	1.00[YRI][hapmap]
rs17176851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17177150	0.86[EUR][1000 genomes]
rs17177163	0.86[EUR][1000 genomes]
rs2058209	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4765785	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832318	chr12:4655799-4875837	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1054218	chr12:4819576-4882667	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4834000-4870200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:4836400-4872400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:4845000-4872600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:4847000-4855200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr12:4848600-4854600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:4850200-4856800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr12:4850200-4861200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr12:4852400-4872400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:4852800-4854400	Weak transcription	Left Ventricle	heart
10	chr12:4853200-4855800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr12:4853600-4855600	Strong transcription	Fetal Brain Female	brain
12	chr12:4853800-4854000	Enhancers	Right Ventricle	heart
13	chr12:4853800-4854200	Strong transcription	Fetal Brain Male	brain
14	chr12:4853800-4854600	Strong transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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