Variant report

Variant	rs11064685
Chromosome Location	chr12:119590881-119590882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:119585579..119587341-chr12:119589077..119590928,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11064683	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs11064694	1.00[CEU][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs11064695	1.00[CEU][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs11064699	1.00[CEU][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs11064701	0.83[JPT][hapmap]
rs11064704	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs12227588	0.86[AMR][1000 genomes]
rs12811848	1.00[CEU][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs12812680	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs34109560	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34168259	0.87[EUR][1000 genomes]
rs34658242	0.87[EUR][1000 genomes]
rs34689026	0.87[EUR][1000 genomes]
rs35911573	1.00[CEU][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs36005387	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66886955	0.85[EUR][1000 genomes]
rs67681082	0.87[EUR][1000 genomes]
rs68067444	0.87[EUR][1000 genomes]
rs7137377	0.84[ASN][1000 genomes]
rs7138273	1.00[CEU][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs7303637	1.00[CEU][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs7304005	1.00[CEU][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs73213443	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73213444	0.93[EUR][1000 genomes]
rs7975529	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9634173	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv902	chr12:119576112-119621140	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv899550	chr12:119581131-119654315	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119571200-119594600	Weak transcription	Fetal Brain Male	brain
2	chr12:119583600-119591200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:119583800-119591600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:119586200-119591000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr12:119586600-119591200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr12:119589800-119591800	Weak transcription	Brain Germinal Matrix	brain
7	chr12:119589800-119594200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr12:119589800-119595000	Weak transcription	Brain Angular Gyrus	brain
9	chr12:119589800-119598200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr12:119590000-119591600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr12:119590000-119595200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr12:119590600-119591400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr12:119590600-119593400	Strong transcription	Fetal Brain Female	brain
14	chr12:119590800-119591000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr12:119590800-119591000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr12:119590800-119591000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr12:119590800-119591000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr12:119590800-119591000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr12:119590800-119591200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr12:119590800-119591200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr12:119590800-119591200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr12:119590800-119591200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr12:119590800-119591200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr12:119590800-119591600	Enhancers	Placenta Amnion	Placenta Amnion
25	chr12:119590800-119592600	Active TSS	HUES6 Cell Line	embryonic stem cell

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