Variant report

Variant	rs9634173
Chromosome Location	chr12:119604881-119604882
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:119601217..119604104-chr12:119604758..119606634,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11064683	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs11064685	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11064694	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes]
rs11064695	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes]
rs11064699	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes]
rs11064701	0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs11064704	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12811848	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes]
rs12812680	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34109560	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34168259	0.91[EUR][1000 genomes]
rs34658242	0.91[EUR][1000 genomes]
rs34689026	0.91[EUR][1000 genomes]
rs35911573	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36005387	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3782919	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs66886955	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67681082	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs68062239	0.80[EUR][1000 genomes]
rs68067444	0.91[EUR][1000 genomes]
rs7138273	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7303637	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs7304005	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes]
rs73213443	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73213444	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7975529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv902	chr12:119576112-119621140	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv899550	chr12:119581131-119654315	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119595600-119609000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:119597400-119613800	Weak transcription	Aorta	Aorta
3	chr12:119598400-119613800	Weak transcription	Right Atrium	heart
4	chr12:119602200-119609200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:119603000-119605000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:119603200-119612200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:119604400-119613600	Enhancers	Placenta	Placenta
8	chr12:119604600-119605800	Weak transcription	Placenta Amnion	Placenta Amnion

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