Variant report

Variant	rs11064764
Chromosome Location	chr12:119811890-119811891
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10774492	0.89[ASN][1000 genomes]
rs10774496	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10849647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10849651	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10849652	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10849653	0.91[ASN][1000 genomes]
rs10849656	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10849657	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10849659	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11064757	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs11064761	0.82[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs11064763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12367398	0.91[CEU][hapmap]
rs12370130	1.00[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4300442	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4465416	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4991185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56686166	0.90[ASN][1000 genomes]
rs7298161	0.93[CHB][hapmap];0.95[JPT][hapmap]
rs7301599	0.93[CHB][hapmap];0.95[JPT][hapmap]
rs7313792	0.93[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs73404383	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv899552	chr12:119733874-119814623	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119807600-119812800	Weak transcription	Placenta	Placenta
2	chr12:119807800-119812800	Enhancers	Fetal Heart	heart
3	chr12:119808400-119812800	Weak transcription	Right Atrium	heart
4	chr12:119810000-119813200	Weak transcription	Fetal Thymus	thymus
5	chr12:119810000-119814400	Enhancers	Fetal Lung	lung
6	chr12:119810400-119812600	Weak transcription	Right Ventricle	heart
7	chr12:119811000-119812200	Enhancers	Left Ventricle	heart
8	chr12:119811400-119812600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr12:119811400-119812800	Weak transcription	GM12878-XiMat	blood
10	chr12:119811400-119814800	Weak transcription	Esophagus	oesophagus
11	chr12:119811400-119816600	Weak transcription	Colon Smooth Muscle	Colon
12	chr12:119811400-119819600	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links